PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0173600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 444aa    MW: 48324 Da    PI: 7.5454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0173600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05277296120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C k+F+r  n++ H+
  ORGLA06G0173600.1 277 FSCPVCYKTFNRYNNMQMHM 296
                        89*****************9 PP
2zf-C2H213.90.00016361383123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk F  + + ++H +++
  ORGLA06G0173600.1 361 FMCRKCGKAFAVRGDWRTHEKNC 383
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-5273299No hitNo description
Gene3DG3DSA:3.30.160.608.1E-6277296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45277299IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743277304IPR007087Zinc finger, C2H2
PROSITE patternPS000280279299IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-6345381No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5357381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808361381IPR007087Zinc finger, C2H2
SMARTSM0035549361381IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
CTHTHKTQLL YLSISLFITV VCLLLHPLCY LLFSFSSYLE LAPYYQSSSM GDPYTNFLRG  60
YHHHHRSHHP LHFPPPPPPP PPPYAASFSG LYSSYLHPPP PPSSPPIREA LPLLSLTPST  120
THDDDHHHRR HDQDHHHHHK QGQEKNSHGG GGAASGSNND DKRESPSAAA AADDQAAEVT  180
VALHIGLPSP SPSDAAAAAG NQAAAVAAAE ASAAGGGSSR MQVEEEGGEE EDEDEAAAAA  240
ATATLPLGCA SIGIGKLTKG QYWIPTPSQI LIGPTQFSCP VCYKTFNRYN NMQMHMWGHG  300
SQYRKGPESL RGTQPTAMLR LPCYCCAAGC RNNIDHPRAR PLKDFRTLQT HYKRKHGIKP  360
FMCRKCGKAF AVRGDWRTHE KNCGKLWYCA CGSDFKHKRS LKDHIRAFGR GHAACGIDSF  420
DDLDADDDPS SDLDHASASA SRVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0173600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711040.0AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642156.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1Q3M30.0I1Q3M3_ORYGL; Uncharacterized protein
STRINGORGLA06G0173600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]