PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0172100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 502aa    MW: 51734 Da    PI: 6.7951
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0172100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.42.8e-931154982374
               GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        ++lLl+cA+ ++ gdl +a+++ + +    asp+gd+  Rla +f++ALa r+  +  +  + +    ++      +  a+ +f+++ P+l+
  ORGLA06G0172100.1 115 RDLLLACADLLQRGDLPAARRAAEIVLAAaASPRGDAADRLAYHFARALALRVDAK-AGHGHVVVGGGAA---RPASSGAYLAFNQIAPFLR 202
                        689*****************9999876665***********************993.3334444333333...4566778999********* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                        f+hltaNqaIleav+g++rvHi+D+d+ +G+QWp+Llqa+a+R+    gpp++R+Tg g+    ++++l +tg+rL+ fA+++++pf+f++l
  ORGLA06G0172100.1 203 FAHLTANQAILEAVDGARRVHILDLDAVHGVQWPPLLQAIAERAdpaLGPPEVRVTGAGA----DRDTLLRTGNRLRAFARSIHLPFHFTPL 290
                        ********************************************66666***********....9*************************** PP

               GRAS 182 ...................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse... 251
                                           +a++ ++     L+++p+E+laVn+v+ lh+l       ++e  ++Lk vk +sP vv+++e+ea  ++    
  ORGLA06G0172100.1 291 llscattaphhvagtstdaAATASTAAAATGLEFHPDETLAVNCVMFLHNLA-----GHDELAAFLKWVKAMSPAVVTIAEREAGGGGDhid 377
                        99999999988777665533334444477889999****************8.....2233567*******************999544366 PP

               GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                        ++ +r+  a+++ysa+f++lea++p+ s+er  vE+e+lgrei+ +v  +g +     +  e+W  + ++aGF + pls +a++qa+lllr 
  ORGLA06G0172100.1 378 DLPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAAVGPSGGR---WWRGIERWGGAARAAGFAARPLSAFAVSQARLLLRL 466
                        9***********************************************99998...78899******************************* PP

               GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        ++ s+gy v+e +g+ +lgW++rpL+svSaW+
  ORGLA06G0172100.1 467 HYpSEGYLVQEARGACFLGWQTRPLLSVSAWQ 498
                        *******************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.888477IPR005202Transcription factor GRAS
PfamPF035149.7E-91115498IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
EAAIASPDVG RARSPSLLNP PSSDAPSPPP PSPPPPPPSP AAHRRCSSSG GGGGDDDGYG  60
GGDGMLRSLH SSSSSDTDNN SGGCKNNGGG GGEAAATVEG GGDQRAVAAA APSTRDLLLA  120
CADLLQRGDL PAARRAAEIV LAAAASPRGD AADRLAYHFA RALALRVDAK AGHGHVVVGG  180
GAARPASSGA YLAFNQIAPF LRFAHLTANQ AILEAVDGAR RVHILDLDAV HGVQWPPLLQ  240
AIAERADPAL GPPEVRVTGA GADRDTLLRT GNRLRAFARS IHLPFHFTPL LLSCATTAPH  300
HVAGTSTDAA ATASTAAAAT GLEFHPDETL AVNCVMFLHN LAGHDELAAF LKWVKAMSPA  360
VVTIAEREAG GGGDHIDDLP RRVGVAMDHY SAVFEALEAT VPPGSRERLA VEQEVLGREI  420
EAAVGPSGGR WWRGIERWGG AARAAGFAAR PLSAFAVSQA RLLLRLHYPS EGYLVQEARG  480
ACFLGWQTRP LLSVSAWQPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-5014349831375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0172100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0326270.0FJ032627.1 Oryza glaberrima clone a0079B18 subtilisin-like protease precursor, ZAC, MYB-CC type transfactor, calcium ion binding protein, Monoculm1, Mlo family protein, aspartic proteinase nepenthesin-1 precursor, microtubule-associated protein MAP65-1a, IQ calmodulin-binding motif family protein, and EMB2261 putative genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642672.10.0protein MONOCULM 1
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLI1Q3K80.0I1Q3K8_ORYGL; Uncharacterized protein
STRINGORGLA06G0172100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.14e-69GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]