PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0168900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 680aa    MW: 75350.7 Da    PI: 6.8371
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0168900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.6e-18247294148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT++Ed++l ++v+ +G g+W+++ r  g++R++k+c++rw ++l
  ORGLA06G0168900.1 247 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 294
                        79******************************************9986 PP

2Myb_DNA-binding41.72.7e-13300343146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++++eE+e +++++  lG++ W++ a+ ++ gRt++++k++w++
  ORGLA06G0168900.1 300 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 343
                        79********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.639242298IPR017930Myb domain
SuperFamilySSF466894.12E-30244341IPR009057Homeodomain-like
SMARTSM007175.2E-16246296IPR001005SANT/Myb domain
PfamPF002496.3E-17247294IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-24248301IPR009057Homeodomain-like
CDDcd001677.58E-12249294No hitNo description
SMARTSM007171.9E-12299347IPR001005SANT/Myb domain
PROSITE profilePS5129416.24299349IPR017930Myb domain
PfamPF002495.8E-12300343IPR001005SANT/Myb domain
CDDcd001672.06E-9302343No hitNo description
Gene3DG3DSA:1.10.10.601.2E-23302347IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
XKTRKPAGLC LCRLRLRSRR ARVVLKLQQP AMQPDSTDRL AGRHAGCSER AADILCKLHR  60
TKQMIIFRKF TTKSKKHSMQ SCKPRLHRWI VLNPNGKLTI YSYFPISFAN TDACTHTSXS  120
QLQISHPHGV HPPYAISYPT SLPVYYSTSL SAAAAHLVST PVSTLPRMRM EGSSPMEEEE  180
EAARLAGSQG ESPAMLHPNG DGDGDGGDDE GDASGGEEEQ GGVARAGVRR RGGGGRVRVR  240
GRIPLKKGPW TPDEDKRLRE YVEAHGEGNW NRVQRNAGLN RCGKSCRLRW ANHLKPDLKK  300
GPFSKEEEEM IIKLHLWLGN KWAKMANSLP GRTDNEIKNF WNTRCKRIQR TGEPLYPKEF  360
NHFKLTDLEV MNCESPDESR AKKRTNEVLQ GNGQSYKEVF FDNLDYSRPE NYIRPNCVTP  420
NSLPVDATSP FGSAIATQDQ SVPFGSAIVS GHPILDGNFS TSGTIQRPMN VELPSLQYPN  480
YDFNNNNAWS YHDPLGHPID QVDFGSLRSE YLSPNNNGLL DALVHGGHGQ GELANSQGSF  540
DACFPRVQCN QVIQSNAFSL SSSFPIIGDD LLENSCHAFV GINNNASSLF LDSQPPPLVD  600
PTFWRHDVSL EPNLPVYCQF NEELPPSNEQ FAKDADDAFG HGGLSDETNL AAAGQGDEHD  660
LENPWASMPG ACDIPDFPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-272453475106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0168900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2120750.0AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641123.10.0transcription factor MYB101
TrEMBLI1Q3H60.0I1Q3H6_ORYGL; Uncharacterized protein
STRINGORGLA06G0168900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.23e-54myb domain protein 101