PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0168900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 680aa MW: 75350.7 Da PI: 6.8371 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.6e-18 | 247 | 294 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+ +G g+W+++ r g++R++k+c++rw ++l ORGLA06G0168900.1 247 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 294 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.7e-13 | 300 | 343 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+e +++++ lG++ W++ a+ ++ gRt++++k++w++ ORGLA06G0168900.1 300 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 343 79********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.639 | 242 | 298 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 244 | 341 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-16 | 246 | 296 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-17 | 247 | 294 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 248 | 301 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.58E-12 | 249 | 294 | No hit | No description |
SMART | SM00717 | 1.9E-12 | 299 | 347 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.24 | 299 | 349 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.8E-12 | 300 | 343 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-9 | 302 | 343 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 302 | 347 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
XKTRKPAGLC LCRLRLRSRR ARVVLKLQQP AMQPDSTDRL AGRHAGCSER AADILCKLHR 60 TKQMIIFRKF TTKSKKHSMQ SCKPRLHRWI VLNPNGKLTI YSYFPISFAN TDACTHTSXS 120 QLQISHPHGV HPPYAISYPT SLPVYYSTSL SAAAAHLVST PVSTLPRMRM EGSSPMEEEE 180 EAARLAGSQG ESPAMLHPNG DGDGDGGDDE GDASGGEEEQ GGVARAGVRR RGGGGRVRVR 240 GRIPLKKGPW TPDEDKRLRE YVEAHGEGNW NRVQRNAGLN RCGKSCRLRW ANHLKPDLKK 300 GPFSKEEEEM IIKLHLWLGN KWAKMANSLP GRTDNEIKNF WNTRCKRIQR TGEPLYPKEF 360 NHFKLTDLEV MNCESPDESR AKKRTNEVLQ GNGQSYKEVF FDNLDYSRPE NYIRPNCVTP 420 NSLPVDATSP FGSAIATQDQ SVPFGSAIVS GHPILDGNFS TSGTIQRPMN VELPSLQYPN 480 YDFNNNNAWS YHDPLGHPID QVDFGSLRSE YLSPNNNGLL DALVHGGHGQ GELANSQGSF 540 DACFPRVQCN QVIQSNAFSL SSSFPIIGDD LLENSCHAFV GINNNASSLF LDSQPPPLVD 600 PTFWRHDVSL EPNLPVYCQF NEELPPSNEQ FAKDADDAFG HGGLSDETNL AAAGQGDEHD 660 LENPWASMPG ACDIPDFPSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 245 | 347 | 5 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0168900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB212075 | 0.0 | AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641123.1 | 0.0 | transcription factor MYB101 | ||||
TrEMBL | I1Q3H6 | 0.0 | I1Q3H6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0168900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12902 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 3e-54 | myb domain protein 101 |