PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0158200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 390aa MW: 40876.3 Da PI: 9.5212 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.5 | 1.6e-17 | 203 | 236 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + ORGLA06G0158200.1 203 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 236 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.19E-12 | 197 | 237 | No hit | No description |
SMART | SM00401 | 2.4E-19 | 197 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.268 | 201 | 233 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 201 | 236 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.70E-14 | 202 | 239 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 203 | 228 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.0E-15 | 203 | 236 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MSTIYMSQLS AALPLMEGEH HHHHQDHHQG HFQAFSMQPK DPPVLFPFVI SRRSSSSSPS 60 DSTTLSYGSD HHLTQQQQHQ HQALLEPQHM IGGSSAGIFA TPFPTVESIR DDMIERSPFD 120 PYDTDKLQAS CGLAKVVAGG KWSAVPAAKM KITRKMGEPS SGVTGGAATT AAPKKPRRRP 180 AQAYEDHGHG GAMGQAFGVI RVCSDCNTTK TPLWRSGPCG PKSLCNACGI RQRKARRAMM 240 ASGLPASPNA AGPKAAAAAA AAAQPKVKKE KRADVDRSSL PFKKRCKAVQ VEDHQTPPAA 300 TNAAAAAAIE ETAESATVAP PPAPATRGGT LVDSIGLSWS KTHAAATAAA TASCSFRPSP 360 VAPGFAAAVQ DEITDAAMLL MTLSCGLVRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 179 | PKKPRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0158200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069851 | 0.0 | AK069851.1 Oryza sativa Japonica Group cDNA clone:J023034D16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641328.1 | 0.0 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
Refseq | XP_015641329.1 | 0.0 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
Refseq | XP_025882362.1 | 0.0 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
TrEMBL | I1Q369 | 0.0 | I1Q369_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0158200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 3e-19 | GATA family protein |