PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA06G0153500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 538aa MW: 58881.8 Da PI: 8.3239

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA06G0153500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.7	8.6e-31	54	230	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+Ptd+el+ e+L++kv+ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ ORGLA06G0153500.1 54 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaa 143 799**********.99*988856665543333333766646******.556667799**************88* PP NAM 78 ...................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l ORGLA06G0153500.1 144 aasssggggnasssssasaaaavarhghqqqqqqqRSETRWHKTGKTRAVVG-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 230 **************************9998755789*******9.99********5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-35	48	138	IPR003441	NAC domain
PROSITE profile	PS51005	26.384	54	249	IPR003441	NAC domain
Pfam	PF02365	1.2E-14	55	230	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-35	184	249	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MDGVVAEDQA GGGGGGHRRL IGSRIEEHRK YMSEESCCPR CGHKIDRKLD WVGLPAGVKF 60 DPTDQELIEH LEAKVRPGGE AAAHPLIDEF IPTIEGEDGI CYTHPEKLPG VSKDGLSRHF 120 FHRPSKAYTT GTRKRRKIQP PAAAASSSGG GGNASSSSSA SAAAAVARHG HQQQQQQQRS 180 ETRWHKTGKT RAVVGGGRQR GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GEAEEERDGE 240 LVVSKIFYQT QPRQCAAADA AATASASAVD RRTTSGRDRA AAAAAAAAAA APMASANVSV 300 AAFHGGAAGI DEFSFAQFRS SFEEAGMGAS SSDHQSAMVD QRRQQQQHDD DEHDHRRGGG 360 GHHYVGQQQS VAATFHVVSS PADPIARLMS PPPAHQGTVM LRQPEPPYIY HNQEDERPHQ 420 PRKFDGRSTS GSGLEEVIMG CTSRRSKGGE TSGGKDGTEW QYPSFWPSDS QDHHGDKDDI 480 EAKQKGETEK RKRRGKTKFL KIHIYQEIFH EQGNSKDFXY FAFWHLVRIE VAGEFPSV

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MDGVVAEDQA GGGGGGHRRL IGSRIEEHRK YMSEESCCPR CGHKIDRKLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRPGGE AAAHPLIDEF IPTIEGEDGI CYTHPEKLPG VSKDGLSRHF  120
FHRPSKAYTT GTRKRRKIQP PAAAASSSGG GGNASSSSSA SAAAAVARHG HQQQQQQQRS  180
ETRWHKTGKT RAVVGGGRQR GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GEAEEERDGE  240
LVVSKIFYQT QPRQCAAADA AATASASAVD RRTTSGRDRA AAAAAAAAAA APMASANVSV  300
AAFHGGAAGI DEFSFAQFRS SFEEAGMGAS SSDHQSAMVD QRRQQQQHDD DEHDHRRGGG  360
GHHYVGQQQS VAATFHVVSS PADPIARLMS PPPAHQGTVM LRQPEPPYIY HNQEDERPHQ  420
PRKFDGRSTS GSGLEEVIMG CTSRRSKGGE TSGGKDGTEW QYPSFWPSDS QDHHGDKDDI  480
EAKQKGETEK RKRRGKTKFL KIHIYQEIFH EQGNSKDFXY FAFWHLVRIE VAGEFPSV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA06G0153500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003713	0.0	AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641895.1	0.0	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-118	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	I1Q322	0.0	I1Q322_ORYGL; Uncharacterized protein
STRING	ORGLA06G0153500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-100	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]