PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0111100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 434aa MW: 47677.5 Da PI: 7.0776 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 114 | 135 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+F++ ++ H+r+H ORGLA06G0111100.1 114 ECQVCHKRFKNDKSMFGHLRSH 135 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.0009 | 287 | 309 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ Fs++ L H+ H ORGLA06G0111100.1 287 YMCKHCNEEFSTHQALGGHMAGH 309 89******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.096 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.037 | 113 | 140 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.66E-7 | 114 | 135 | No hit | No description |
Pfam | PF13912 | 3.1E-4 | 114 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.66E-7 | 282 | 309 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-4 | 286 | 313 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.081 | 287 | 310 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.7E-7 | 287 | 312 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.596 | 287 | 314 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 289 | 310 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPSLMS RRARDELVDG 60 SCSGDEDLAD HGAWPQPGGG AGGDHGGVPR GGEAGEAEAD VDVDGDGGSA GDVECQVCHK 120 RFKNDKSMFG HLRSHPNRGY KGATPPLKMS STPSSSSPVI PAGSPPPQPP PSSSSSLRPV 180 GDSNSSMPTP GISLTTYEKL AACVMLTLRR RYDRDQRQLQ APPKLERAGA GDQLATNMVE 240 GAEGSSRAIV GDEHEHEARR RKKGKRKLKE PREEERKVKK EKKRHPYMCK HCNEEFSTHQ 300 ALGGHMAGHH KEKRILLKEK QRERSLVLEK EPERSHHLME EKHPERGLIL EKKQLERSSI 360 VLKEKQPDKN LILEEEQPEV VYQDKIDQTM NWQKTERNEG ASYLGGGSNT APIAQEDSRP 420 PFGFDLNVEA PEQE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 260 | 267 | RKKGKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0111100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006164 | 0.0 | AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642158.1 | 0.0 | uncharacterized protein LOC107278701 | ||||
TrEMBL | I1Q5K4 | 0.0 | I1Q5K4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0111100.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | ORGLA06G0241700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13916 | 20 | 28 |