PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0094900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 484aa    MW: 52085.2 Da    PI: 5.3008
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0094900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.6e-081859338
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  ORGLA06G0094900.1 18 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 59
                       678*****************************6567777776 PP
2CCT67.24.5e-23427470144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  ORGLA06G0094900.1 427 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 470
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6231663IPR000315B-box-type zinc finger
SMARTSM003363.9E-111663IPR000315B-box-type zinc finger
PfamPF006431.3E-61860IPR000315B-box-type zinc finger
CDDcd000212.65E-81963No hitNo description
PROSITE profilePS5101716.083427469IPR010402CCT domain
PfamPF062038.4E-18427469IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSSTAKAAAA GAVGAKSARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER  60
LRLRPSSPPP LVPPSGSGRR DEAVPAAWFK RKARTPRSHA AKSAAAVGQL LSRRLVVVPE  120
AAAGSGGDSP EERKDEGEIV EEQEQLLYRV PIFDPALSEF CSPPPLEDAA AAVSCCNEDG  180
AVENPTKPSM TTTTATTPPL QFFPDGQANF GPTDAELREF AADMEALLGR GLDDGNDEDS  240
FCMETLGLIE PVDDDAGRVK VEADGDAGMT LAWCHELDTE TSSGEMLDID FDCGSPQAAT  300
TPDEKVRSSG PAAAAADDDD AQLQQSNLAL SLNYEAIIES WGTSPWTDGE RPHVKLDDSW  360
PRDYSVRATP CTPYASSHRI LHNLACTDDL LRRRAAVQGV WMAAAGVFGH GGEEQALTPR  420
LGMDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRA AAAATAAVAT  480
ACVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437453RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0094900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049930.0AP004993.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0037N01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641417.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLI1Q1D60.0I1Q1D6_ORYGL; Uncharacterized protein
STRINGORGLA06G0094900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-55B-box type zinc finger protein with CCT domain