PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA06G0076500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 399aa MW: 40037.2 Da PI: 9.8127 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.5 | 1.9e-41 | 65 | 245 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ ORGLA06G0076500.1 65 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlr 156 789******************************************************************99998999999999888889999 PP TCP 89 ......................................kaaksaakskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137 + +s+ + s +s + l+++ s + a a+ +r+ r++++m+++++ + ORGLA06G0076500.1 157 laglagprfgggaraadawdrvvglgfggaadapssatS--SSSSPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 245 99999999999999999**********999999986422..33335555566666556666644422333333566668888888887765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-44 | 69 | 245 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 71 | 125 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 399 aa Download sequence Send to blast |
MDVTGDGGGG GRRPNFPLQL LGKKEEQTCS TSQTAGAGGG GVVGANGSAA AAQGELQVRT 60 KAAAPPKRTS TKDRHTKVDG RGRRIRMPAI CAARVFQLTR ELGHKTDGET IEWLLQQAEP 120 AVIAATGTGT IPANFTSLNI SLRSSGSSLS IPSHLRLAGL AGPRFGGGAR AADAWDRVVG 180 LGFGGAADAP SSATSSSSSP LLLSFHSGSV GLDVSPPSAS TSPAAADLSR KRRWEQEMQQ 240 QQQYQQQMAG YTQSQIPAGT VWMVPSSNAQ AAGGGAPPGG GGESIWTFPQ SGSGGGGGAA 300 TVYRGVPSGL HFMNFPATPM ALLPGGQQLG LAGAGGGGEG HPGILAALNA YRAQAAQPDA 360 GAAAQNGAQG SSQHRQHQHH GGAGGGGDER HESMSASDS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA06G0076500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK064240 | 0.0 | AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence. | |||
GenBank | AP003513 | 0.0 | AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04. | |||
GenBank | AP003569 | 0.0 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641757.1 | 1e-164 | transcription factor TCP15 | ||||
TrEMBL | I1Q0V2 | 0.0 | I1Q0V2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0076500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-43 | TCP family protein |