PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0065500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 209aa    MW: 22119.1 Da    PI: 9.8661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0065500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08130170954
                        HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         r RR+r+ +++  L++l+P  a      +l+ a++Le+A++Y+k L
  ORGLA06G0065500.1 130 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAIRYVKFL 170
                        699*****************966......9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.659121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-9124175No hitNo description
Gene3DG3DSA:4.10.280.105.0E-11125185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-13126187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-5131170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEFDMAMDMM SQEQLMHIIS QLDSALASSP SPSTSPSASP PRQSPAAQVP VLPAGGLLNA  60
ATVSTSRAQA APPALHPVAA MAAVQSSSRG IMYTTTRQGV IDAAEEEEAA APRPRRRNAR  120
VSSEPQSVAA RLRRERVSQR MRALQRLVPG GARLDTASML EEAIRYVKFL KGHVQSLERA  180
AAALHMHGGH AAAAGFAGDA VYSCPSYYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0065500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882279.11e-88transcription factor HEC2
TrEMBLI1Q0J21e-145I1Q0J2_ORYGL; Uncharacterized protein
STRINGORGLA06G0065500.11e-146(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.16e-21bHLH family protein