PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0059900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 293aa MW: 31500.2 Da PI: 8.3825 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.8 | 2.1e-24 | 84 | 127 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++ +k+CE+H+hrg++rsrk++e ORGLA06G0059900.1 84 DPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 127 79***************************************997 PP | |||||||
2 | QLQ | 62.7 | 9.7e-22 | 11 | 45 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+aa++PvPp+Ll++++ ORGLA06G0059900.1 11 LFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLR 45 5******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.4E-10 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.039 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.7E-16 | 12 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.714 | 84 | 128 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-19 | 85 | 127 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MMAGGGSGRC LFTATQWQEL EHQALIYKYM AAGAPVPPDL LLHLRHRAAA ADVDTVPSLA 60 FPPHHLGWGC YGAAAAQYGR RVEDPEPGRC RRTDGKKWRC SREAYGESKY CEKHMHRGKN 120 RSRKPVEMPP PAAAAVYRPS ALSISPPPHD AGAGAGAPLQ LHLDSFHAST SPPPSYHRYA 180 HTSSAPLFPS SAAGYGGGWS LSKEHCLTLG GAAADLSLDK PADHHRDATS ATTEKPLRRF 240 FDEWPRSDDG RTPWDGTQLS ISIPTAAAAS PDLAIAGAAS RYHSNGDHLR TSE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0059900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836198 | 0.0 | CT836198.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641768.1 | 0.0 | growth-regulating factor 2 | ||||
Swissprot | Q6AWY7 | 0.0 | GRF2_ORYSJ; Growth-regulating factor 2 | ||||
TrEMBL | I1Q0D6 | 0.0 | I1Q0D6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0059900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13992 | 25 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-42 | growth-regulating factor 5 |