PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0059500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 28991.1 Da PI: 6.7326 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l+ ++k +G g W+ ++++ g++R++k+c++rw++yl ORGLA06G0059500.1 14 RGAWTSKEDDMLASYIKSHGEGKWREVPQRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.5e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ ORGLA06G0059500.1 67 RGNIDDDEEELIVRLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 6777789***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 6 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.248 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.7E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.57E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.966 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-23 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-13 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-9 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRRACCAKE GMKRGAWTSK EDDMLASYIK SHGEGKWREV PQRAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI DDDEEELIVR LHTLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSRKIGTAA 120 TAAAGSRGGS TPDTARATDA ASSSSVVPPG QQQQPASRAD TDTATAAAAA ATTTTVWAPK 180 AVRCTRGFFF HDRETAPLAA AAPAPAGELG DGDDADCDYY CSGSSSAATT TSSSSFPAVV 240 EPCFSAGDDW MDDVRALASF LDTDDAWNLC A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0059500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ379703 | 0.0 | HQ379703.1 Oryza sativa Japonica Group isolate Z418-A C1 protein (C1) mRNA, complete cds. | |||
GenBank | Y15219 | 0.0 | Y15219.1 Oryza sativa mRNA for transcriptional activator. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642631.1 | 1e-154 | anthocyanin regulatory C1 protein | ||||
Swissprot | P10290 | 3e-88 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | I1Q0D2 | 0.0 | I1Q0D2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0059500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 3e-58 | myb domain protein 7 |