PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0059500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 271aa    MW: 28991.1 Da    PI: 6.7326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0059500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT  Ed+ l+ ++k +G g W+ ++++ g++R++k+c++rw++yl
  ORGLA06G0059500.1 14 RGAWTSKEDDMLASYIKSHGEGKWREVPQRAGLRRCGKSCRLRWLNYL 61
                       89********************************************97 PP

2Myb_DNA-binding49.97.5e-1667111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+   +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ 
  ORGLA06G0059500.1  67 RGNIDDDEEELIVRLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111
                        6777789***************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22663IPR009057Homeodomain-like
PROSITE profilePS5129416.248961IPR017930Myb domain
SuperFamilySSF466892.7E-2711108IPR009057Homeodomain-like
SMARTSM007173.0E-121363IPR001005SANT/Myb domain
PfamPF002494.9E-151461IPR001005SANT/Myb domain
CDDcd001677.57E-91661No hitNo description
PROSITE profilePS5129424.96662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2364116IPR009057Homeodomain-like
SMARTSM007179.0E-1466114IPR001005SANT/Myb domain
PfamPF002499.3E-1368111IPR001005SANT/Myb domain
CDDcd001671.30E-972112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090379Biological Processsecondary cell wall biogenesis involved in seed trichome differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRRACCAKE GMKRGAWTSK EDDMLASYIK SHGEGKWREV PQRAGLRRCG KSCRLRWLNY  60
LRPNIKRGNI DDDEEELIVR LHTLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSRKIGTAA  120
TAAAGSRGGS TPDTARATDA ASSSSVVPPG QQQQPASRAD TDTATAAAAA ATTTTVWAPK  180
AVRCTRGFFF HDRETAPLAA AAPAPAGELG DGDDADCDYY CSGSSSAATT TSSSSFPAVV  240
EPCFSAGDDW MDDVRALASF LDTDDAWNLC A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26121185110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0059500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3797030.0HQ379703.1 Oryza sativa Japonica Group isolate Z418-A C1 protein (C1) mRNA, complete cds.
GenBankY152190.0Y15219.1 Oryza sativa mRNA for transcriptional activator.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642631.11e-154anthocyanin regulatory C1 protein
SwissprotP102903e-88MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLI1Q0D20.0I1Q0D2_ORYGL; Uncharacterized protein
STRINGORGLA06G0059500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-58myb domain protein 7
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]