PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0049400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 368aa    MW: 38100.4 Da    PI: 12.2963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0049400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.6e-091712091255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  ORGLA06G0049400.1 171 RRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 209
                        9*****************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12170229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6171209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12172217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-6175213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
CSRAAATRSP AAAARGRRMT SSTRCSPRCR RRGPTWGAAA AARRGSRRGR SIRQRRRRRR  60
RRCSTSRRCS RPASGITRSV GLAAAGERSR XCCSXASCTG RPAAARRTGA ARSRRCRCSR  120
TGRTCRRGRR WRAASSRPMP PPEASTRCST GSACTAAAAA PGSRRSARXL RRERIAERMK  180
SLQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAGMAPLV ASMSSEGNSN  240
GSSNGGGGKA SKGGTGGEGG GGGGGGGGGT GGGMRVTEQQ VAKMMEEDMG TAMQYLQGKG  300
LCLMPISLAS AISSATSSAS LLSRPSIRHA GAPPQTMLDA AGPTSPAAMS NGDDPRHAKA  360
DSGAGGTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259RQRRRRRR
25261RQRRRRRRRR
35359QRRRRRR
45461RRRRRRRR
55561RRRRRRR
6254269TGGEGGGGGGGGGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0049400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059190.0AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642979.14e-73transcription factor bHLH66
SwissprotQ9LSQ34e-57BH082_ARATH; Transcription factor bHLH82
TrEMBLI1Q0310.0I1Q031_ORYGL; Uncharacterized protein
STRINGORGLA06G0049400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-36LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]