PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0040900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 410aa    MW: 45441.1 Da    PI: 7.7106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0040900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.89.9e-07157180123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C  Cg++F+++ +L+rH r  H
  ORGLA06G0040900.1 157 YSCAVCGRRFPTRPDLTRHFRQlH 180
                        99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-5155183No hitNo description
Gene3DG3DSA:3.30.160.601.0E-4156183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.256157185IPR007087Zinc finger, C2H2
SMARTSM003552.9E-4157180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159180IPR007087Zinc finger, C2H2
CDDcd061674.08E-10175307No hitNo description
Gene3DG3DSA:3.40.50.10101.3E-4208296IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MPPPLSFLHL AANPTPLHAS PLRRARLRHR LSLRTDHPSR RAVASASASA GENPSTPGGP  60
IADVEMVRGK DGVWTARPPT VVVLWDLDNK PPRGPPFPAA TALRDAASLL GRVVSVSAFA  120
NRHAFSHVPA WVADKRRERR AMDRAERAGA ASPPVPYSCA VCGRRFPTRP DLTRHFRQLH  180
QRERNKKLSR LRSLKGKKRQ KFRERFISGN TKYDDAAREL LTPKVGYGLA AELRRAGVHV  240
RTVSDKPQAA DHALKRQVKH SVACGVDWLV LVSDDSDFTD TVRKARAADL RTVVVGDGCR  300
ALGSVADIWL PWDRVENGEV DEDMLRNGTH MGFRDEEEDE QDDDEFIVDW DTSDLDGVVD  360
DIVATRTKLF GATTMSAFAD EEIMDGILGV GINGGYMLWS SDDEDEDGYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0040900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCT8337170.0CT833717.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN087K01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641376.20.0uncharacterized protein LOC4340243
TrEMBLI1PZU60.0I1PZU6_ORYGL; Uncharacterized protein
STRINGORGLA06G0040900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-92C2H2-like zinc finger protein