PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0005600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 526aa    MW: 57807.7 Da    PI: 7.7848
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0005600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-083153521954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  ORGLA06G0005600.1 315 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 352
                        554459******************************88 PP
2BELL98.84.2e-32171239472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +l+++ka++ls++eeVd+rY++y+eq+++v  sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+
  ORGLA06G0005600.1 171 DLERRKARILSMVEEVDRRYRRYREQMRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 239
                        6899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.5E-71102237IPR006563POX domain
PfamPF075261.2E-39108235IPR006563POX domain
PROSITE profilePS5007111.564293356IPR001356Homeobox domain
SMARTSM003896.5E-9296360IPR001356Homeobox domain
CDDcd000861.20E-11296357No hitNo description
SuperFamilySSF466895.99E-17297363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27299362IPR009057Homeodomain-like
PfamPF059202.5E-17313352IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MMAAHHHHHE HHHLLDMSSP PNASGAIISS FDHAAGLLSL HDVAAAAADH HHHHLRGGGG  60
GLQLPSPWSQ QQVSLSLYNN AAGAAGSPPS SLVAHQQLAA AQPLMFQLRG SKYLGPVKAL  120
LAEFCSLDVE AMDGAKQQRP PNPNPKIGKW DDVEGSGSWG NLSLSSMDLL DLERRKARIL  180
SMVEEVDRRY RRYREQMRAV EVSFEAVAGG GAAQVYTKLA MRAMSRHFRC LRDALVGQVR  240
ALRNAMGESQ RDAAGGVAAA APGATKGDTP RLRVLDQCLR QQRAFQQSGA VDSFPWRPQR  300
GLPERAVAVL RAWLFEHFLH PYPNDVDKHI LARQTGLSRS QVSNWFINAR VRLWKPMIED  360
MYKEETKPES SDGNNKLNPS AAGNKQQHRD DPKKNYTATT AEASLVQQSS YHLHLRSSGN  420
PNSSSLMIPA AASTSIDHHH DSSHQLLGGH SYSSAAGLHH GHGGAVSLTL GLQQQQQPFA  480
ASMMHQHQQQ QQQQQSFMVE AAEEEEDDVL PYRNLMESQL LHDFAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-15302359562Homeobox protein Meis2
3k2a_B4e-15302359562Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0005600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641004.10.0homeobox protein BEL1 homolog
TrEMBLI1PYU40.0I1PYU4_ORYGL; Uncharacterized protein
STRINGORGLA06G0005600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-87TALE family protein