PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0003400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 300aa MW: 33261.6 Da PI: 7.4761 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 42 | 86 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT E++++++a +++ + Wk+I +++g +t q++s+ qky ORGLA06G0003400.1 42 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 86 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.92E-16 | 36 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.234 | 37 | 91 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.9E-18 | 40 | 89 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.0E-6 | 40 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-10 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-10 | 42 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.77E-7 | 44 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MSSAPQQLLD SSSPGPGPGP GPEVEDDGGR RVRKPYTITK SRESWTDPEH DKFLEALQLF 60 DRDWKKIEAY VGSKTVIQIR SHAQKYFLKV QKNGTGEHLP PPRPKRKAAH PYPHKASKRA 120 PQVVLPQQAS HLMEQGCLIP MDISPVARNF NANDVFSSWD SALAQSFSPR HTHGAANNCS 180 SSVESQSGTC PTSEAIEQEI MLPTLRAMPD FAQVYNFLGS IFDPETSGHL QRLREMDPID 240 VETVLLLMKN LSINLTNPNF EAHRKVLASH GSGMDQVKHE SLGDLGSTHT LHLPFMVTTK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0003400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111672 | 0.0 | AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642931.1 | 0.0 | protein REVEILLE 6 | ||||
Swissprot | Q8RWU3 | 5e-93 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | I1PYS2 | 0.0 | I1PYS2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0003400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 4e-79 | MYB_related family protein |
Publications ? help Back to Top | |||
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