PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0002300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 364aa    MW: 41570.2 Da    PI: 6.8291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0002300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.71.3e-54171531129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                        +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++       ++++e++ewyfFs++dkky+tg+r+nrat++g+Wka
  ORGLA06G0002300.1  17 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringgSAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKA 107
                        69****************************.99**************9557777664455778***************************** PP

                NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        tg+dk+++++  ++ lvg++ktLv+y+grap+g+k+dW+mheyrle
  ORGLA06G0002300.1 108 TGRDKPIYATkqHSLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 153
                        ********98434445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-607173IPR003441NAC domain
PROSITE profilePS5100559.53117173IPR003441NAC domain
PfamPF023652.2E-2818152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDGSSMSSSS TQQQAQVPPG FRFHPTDEEL VDYYLRKKVA ARRIDLNVIK DVDLYKIEPW  60
DLQERCRING GSAAEEQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYATKQH  120
SLLVGMRKTL VYYRGRAPNG HKSDWIMHEY RLETTETAPP QEEGWVVCRV FKKRLPTTRR  180
DSDHDAPCGS WYVDEDAPGA FMSPMMITRS SILRPHQHHA GITLQEQHLH TTYKHRDLTT  240
KIQQLQVPAA GHHLLNTMPH DLESSTSSFH SLLVSPDHHQ INMHHAQADP FFDDMHAVDQ  300
ATTTDWRVLD KFVASQLSND ATNKPADHYT DEGDILQVSD KQQEVAAADY ASTSTSSSQI  360
DPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-49111749169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0002300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340760.0JN634076.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642963.10.0NAC domain-containing protein 105
RefseqXP_015642964.10.0NAC domain-containing protein 105
SwissprotF4HYV51e-103NAC26_ARATH; NAC domain-containing protein 26
TrEMBLA0A0E0HJM10.0A0A0E0HJM1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PSE20.0A0A0E0PSE2_ORYRU; Uncharacterized protein
TrEMBLA2Y8A70.0A2Y8A7_ORYSI; Uncharacterized protein
TrEMBLI1PYR10.0I1PYR1_ORYGL; Uncharacterized protein
TrEMBLQ8H6240.0Q8H624_ORYSJ; Os06g0104200 protein
STRINGORUFI06G00250.10.0(Oryza rufipogon)
STRINGOS06T0104200-010.0(Oryza sativa)
STRINGONIVA06G00260.10.0(Oryza nivara)
STRINGORGLA06G0002300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.14e-91Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]