PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0000500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 392aa    MW: 43970.5 Da    PI: 7.5817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0000500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1553.3e-48181481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrF+Ptdeelv +yLk k++g++++    i++vd+ ++ePwdLp +  +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+
  ORGLA06G0000500.1  18 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDR 109
                        79*************************999889***************5347777888********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + s+  g l+g+kktLvf++grap+g +t W+mheyr 
  ORGLA06G0000500.1 110 LIRSRpAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRT 148
                        ****988889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-568169IPR003441NAC domain
PROSITE profilePS5100555.13818169IPR003441NAC domain
PfamPF023652.8E-2619147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MKQGKVEMTP AVAAAAVLPV GFRFRPTDEE LVRHYLKGKI AGRSHPDLLL IPDVDLSTCE  60
PWDLPAMSVI KSDDPEWFFF APRDRKYPGG HRSNRSTAAG YWKATGKDRL IRSRPAGPLI  120
GIKKTLVFHR GRAPRGLRTA WIMHEYRTTE PHFQSGKNGS FVLYRLFNKH EQDDTHTPAS  180
NLDQQLSTSS QGNPQNGTPA VQPALASIMK DHQTLPSSGF SQLTEIQDAS TSVHDKEQTV  240
AHDDAFLDVL SQLPDLEPEQ RYNGFPNITS PIRPYSDHPF VGNLGEQDLS AHFGSTLSEQ  300
DLQSLLFSPN YTKMDKHPTG NVESNPTASS NNPNNNTLLM DSWRKNDSYQ MLLIQTTQML  360
LAVLLQSMHH KQKQVMLILK QEPRVAAWST VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-431817020169NAC domain-containing protein 19
3swm_B2e-431817020169NAC domain-containing protein 19
3swm_C2e-431817020169NAC domain-containing protein 19
3swm_D2e-431817020169NAC domain-containing protein 19
3swp_A2e-431817020169NAC domain-containing protein 19
3swp_B2e-431817020169NAC domain-containing protein 19
3swp_C2e-431817020169NAC domain-containing protein 19
3swp_D2e-431817020169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0000500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641780.0AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0NAC domain-containing protein 7
TrEMBLI1PYP30.0I1PYP3_ORYGL; Uncharacterized protein
STRINGORGLA06G0000500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-67NAC transcription factor-like 9