PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0226800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 159aa MW: 16962.6 Da PI: 5.573 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 6 | 28 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Iar+++ gRt++++k++w++ ORGLA05G0226800.1 6 RWSKIARYLP-GRTDNEIKNFWRT 28 5*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.711 | 1 | 34 | IPR017930 | Myb domain |
CDD | cd00167 | 1.60E-8 | 2 | 28 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-11 | 3 | 29 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.11E-7 | 4 | 36 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-7 | 6 | 28 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
SLGFFRWSKI ARYLPGRTDN EIKNFWRTKI QKKHRKSTDG IYATTTSESI MPAATVHQNT 60 VAEDQGSSSV SGRTTTATVA VTQEYAIEAP TPSGMSSGSY LDQLQPGYAS SIHGGQDGGA 120 AAAAAGDVVV SDEFLAASSD NFWALEDLWP TVQSLHGNC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0226800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 0.0 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AC120990 | 0.0 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639020.1 | 1e-107 | transcription factor MYB21 | ||||
TrEMBL | I1PY20 | 1e-114 | I1PY20_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0226800.1 | 1e-115 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-18 | myb domain protein 21 |