PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0223800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 514aa MW: 54477 Da PI: 6.8977 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.4 | 3.7e-16 | 70 | 129 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 ++R+++ +eq+++Le F++ +p ++e++++ +l ++ +++V++WFqNr+ + k ORGLA05G0223800.1 70 KPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygQVGDANVFYWFQNRKSRTK 129 89*****************99*************************************99 PP | |||||||
2 | Wus_type_Homeobox | 107.7 | 6.8e-35 | 69 | 131 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG+++d+NVfyWFQNrk+R ++k ORGLA05G0223800.1 69 PKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTKNK 131 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-11 | 64 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.074 | 66 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-6 | 68 | 135 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-6 | 69 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.05E-6 | 69 | 131 | No hit | No description |
Pfam | PF00046 | 8.4E-14 | 70 | 129 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MASPNRHWPS MFRSNLACNI QQQQQPDMNG NGSSSSSFLL SPPTAATTGN GKPSLLSSGC 60 EEGTRNPEPK PRWNPRPEQI RILEGIFNSG MVNPPRDEIR RIRLQLQEYG QVGDANVFYW 120 FQNRKSRTKN KLRAAGHHHH HGRAAALPRA SAPPSTNIVL PSAAAAAPLT PPRRHLLAAT 180 SSSSSSSDRS SGSSKSVKPA AAALLTSAAI DLFSPAPAPT TQLPACQLYY HSHPTPLARD 240 DQLITSPESS SLLLQWPASQ YMPATELGGV LGSSSHTQTP AAITTHPSTI SPSVLLGLCN 300 EALGQHQQET MDDMMITCSN PSKVFDHHSM DDMSCTDAVS AVNRDDEKAR LGLLHYGIGV 360 TAAANPAPHH HHHHHLASPV HDAVSAADAS TAAMILPFTT TAAATPSNVV ATSSALADQL 420 QGLLDAGLLQ GGAAPPPPSA TVVAVSRDDE TMCTKTTSYS FPATMHLNVK MFGEAAVLVR 480 YSGETVLVDD SGVTVEPLQQ GATYYVLVSE EAVH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0223800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124143 | 0.0 | AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881188.1 | 0.0 | WUSCHEL-related homeobox 12 | ||||
Swissprot | A3B6V0 | 0.0 | WOX12_ORYSJ; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A0D3GAV4 | 0.0 | A0A0D3GAV4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PXZ0 | 0.0 | I1PXZ0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0223800.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART05G25900.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-46 | homeobox-3 |
Publications ? help Back to Top | |||
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