PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0222500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 34100.4 Da PI: 9.4414 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106 | 4.7e-33 | 65 | 206 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ ORGLA05G0222500.1 65 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHsd 151 799************.99****998885665442...133333665557**********.555666688******************84445 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+ g kk+Lv+y g+++k+ekt+Wvmh+y+l ORGLA05G0222500.1 152 evdggETRWHKTGKTRPVMA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206 55544778************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-38 | 56 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.064 | 65 | 225 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-15 | 66 | 206 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MTWCNSFSDV RTAVDSSLSP AAAVAAAAGK KAAASLAVLV KMCPSCGHRA RYEQETTTIQ 60 DLPGLPAGVK FDPTDQELLE HLEGKARPDS RKLHPLVDEF IPTIEGENGI CYTHPERLPG 120 VSKDGLVRHF FHRPSKAYTT GTRKRRKVHS DEVDGGETRW HKTGKTRPVM ANGRPRGYKK 180 ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EERDGELVVS KVFFQTQPRQ CGSTAAAAAA 240 KEASAAVAAA VVNSNYSIVH GHQGGGGGSF LKEANVVHEF YDPAATMGYR PPAPAAHFAP 300 NFAVHAARNS FGGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-11 | 65 | 206 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0222500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100983 | 0.0 | AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639992.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-126 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A0D3GAT2 | 0.0 | A0A0D3GAT2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PR83 | 0.0 | A0A0E0PR83_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PXX7 | 0.0 | I1PXX7_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6AUG9 | 0.0 | Q6AUG9_ORYSJ; Os05g0563000 protein | ||||
STRING | ORUFI05G27670.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0563000-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA05G0222500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART05G25770.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-118 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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