PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0199300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 492aa    MW: 53818.6 Da    PI: 6.6258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0199300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.91.6e-26201573128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.a 85 
                        +GfrF+P++ e v +yL ++++g++   + +i   ++y++eP++L  +        ++e+ wyf s+rd+ky++gkr++r+t+  +g+Wk +
  ORGLA05G0199300.1  20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaS 111
                        7************************7666779999**********733455532233777********************887679****54 PP

                NAM  86 tgk...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        tgk   + ++++  g ++ + ++Lv++kg  ++ +kt+W+m e+++
  ORGLA05G0199300.1 112 TGKtegKDPITECYGWVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157
                        6664435678777888999**********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.02818190IPR003441NAC domain
SuperFamilySSF1019411.44E-2919190IPR003441NAC domain
PfamPF023657.6E-1520156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFE  60
PERLINEKCN GGVGGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP  120
ITECYGWVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAA GGSSNQRQLD  180
QYVLCRIYTS PKKGADDGEQ AEVVRGGGGE DIDEWAEACA VFDLGPETAE GSDNADAAAA  240
AGDMRSAKQA GKRPVAAAAV AEQPSKRPWL PPSPSTPCDG GPSQAMGNRQ VPMQGLSLMH  300
NFPPPPTTFC GHAPLQQGFP VHNNRAQMRW PTMQHNCMPS PAHSFQPRPV QRRPVLVGQA  360
PPQRRPVHHV GGHAPMHMHQ AQWTPVHIAQ APMQQLPFDD WVFDPFDDPP PPMQQLPVMM  420
NNYQPQAPMQ LPPMMNNDQP AMVHGGEVQA PMQLLPATTH GGEVQAPMPL NVYEEEQRPS  480
QEDGGQCTNA EG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-162118820163NO APICAL MERISTEM PROTEIN
1ut4_B4e-162118820163NO APICAL MERISTEM PROTEIN
1ut7_A4e-162118820163NO APICAL MERISTEM PROTEIN
1ut7_B4e-162118820163NO APICAL MERISTEM PROTEIN
4dul_A4e-162118820163NAC domain-containing protein 19
4dul_B4e-162118820163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0199300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881431.11e-178pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLI1PX950.0I1PX95_ORYGL; Uncharacterized protein
STRINGORGLA05G0199300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.14e-19NAC domain containing protein 2