PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA05G0197200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 291aa MW: 30302.5 Da PI: 7.4818

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA05G0197200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.6	2.3e-30	51	155	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++ +++ + +a++s ++ ORGLA05G0197200.1 51 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfang 138 78*************************************************************99999....22222222211111222233 PP TCP 89 ................k 89 + ORGLA05G0197200.1 139 gdghhgasassmledgD 155 34444333333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-26	52	114	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.959	52	110	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MISNNSTNEE LGGGGRKAAD QPSGGAAAVA SSRHWSASTE SRIVRVSRVF GGKDRHSKVR 60 TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI NAAQAEIDKL PPLQFPPHDH 120 DLVAAAASSM APPPFANGGD GHHGASASSM LEDGDKAAGG GGMKAFMSLS NSLGLLNAAT 180 MPATLAAHHH HHHHAAAYYA AAESWGNGGN GGHHHDVSHG VSPSAHNSPF PSLLSLAPGS 240 HHQFVFYSPE GGGFAVKEAA AEQFPVDSLD HSQGQLTLSS ARSFLHSGSQ G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-20	57	111	1	55	Putative transcription factor PCF6
5zkt_B	1e-20	57	111	1	55	Putative transcription factor PCF6
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00065	PBM	Transfer from AT5G60970	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA05G0197200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130604	0.0	AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence.
GenBank	AK069938	0.0	AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	GQ229484	0.0	GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637968.1	1e-157	transcription factor TCP13
TrEMBL	I1PX74	0.0	I1PX74_ORYGL; Uncharacterized protein
STRING	ORGLA05G0197200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-41	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5