PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0197200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 291aa    MW: 30302.5 Da    PI: 7.4818
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0197200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.62.3e-3051155389
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 
                        g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++    +++ + +a++s ++      
  ORGLA05G0197200.1  51 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfang 138
                        78*************************************************************99999....22222222211111222233 PP

                TCP  89 ................k 89 
                                        +
  ORGLA05G0197200.1 139 gdghhgasassmledgD 155
                        34444333333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-2652114IPR005333Transcription factor, TCP
PROSITE profilePS5136929.95952110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MISNNSTNEE LGGGGRKAAD QPSGGAAAVA SSRHWSASTE SRIVRVSRVF GGKDRHSKVR  60
TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI NAAQAEIDKL PPLQFPPHDH  120
DLVAAAASSM APPPFANGGD GHHGASASSM LEDGDKAAGG GGMKAFMSLS NSLGLLNAAT  180
MPATLAAHHH HHHHAAAYYA AAESWGNGGN GGHHHDVSHG VSPSAHNSPF PSLLSLAPGS  240
HHQFVFYSPE GGGFAVKEAA AEQFPVDSLD HSQGQLTLSS ARSFLHSGSQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2057111155Putative transcription factor PCF6
5zkt_B1e-2057111155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0197200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306040.0AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence.
GenBankAK0699380.0AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankGQ2294840.0GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637968.11e-157transcription factor TCP13
TrEMBLI1PX740.0I1PX74_ORYGL; Uncharacterized protein
STRINGORGLA05G0197200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5