PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0167500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 18004.1 Da PI: 8.3722 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00083 | 33 | 52 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F++ L H ORGLA05G0167500.1 33 FRCKTCSKTFTSFQALGGHR 52 89*********988886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.1E-9 | 32 | 55 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.41E-6 | 32 | 55 | No hit | No description |
SMART | SM00355 | 0.41 | 33 | 55 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.41E-6 | 85 | 112 | No hit | No description |
SMART | SM00355 | 5 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.4E-10 | 90 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MASGQRAVGE GSGGLRPTTH VAGGGGSARG EYFRCKTCSK TFTSFQALGG HRTGHTRMAA 60 RQRQEHGAAG AAVVGATNNQ RRVVSAHQWH LCAVCGVEFR MGQALGGHMR RHRGEAAAAT 120 PPAAAAAASA GAVSSVEPPE MLDLNSPPAV EEAGEGDQEV ERAEQEPRLL NLLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0167500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC117265 | 0.0 | AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638878.1 | 1e-100 | zinc finger protein ZAT7 | ||||
TrEMBL | A0A0D3G8M3 | 1e-121 | A0A0D3G8M3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0A0B3 | 1e-121 | A0A0E0A0B3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PWC7 | 1e-121 | I1PWC7_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM05G20400.1 | 1e-121 | (Oryza glumipatula) | ||||
STRING | ORGLA05G0167500.1 | 1e-121 | (Oryza glaberrima) | ||||
STRING | OBART05G19310.1 | 1e-121 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19054 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 2e-22 | C2H2 family protein |