PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0166300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 586aa    MW: 64571.9 Da    PI: 8.483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0166300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-085895147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g WT+eEde+l +av  + g++Wk+I           qc +rwqk+
  ORGLA05G0166300.1 58 KGGWTPEEDEKLRKAVDIYNGKNWKKI----E-----VQCLHRWQKV 95
                       688***********************5....3.....4577777775 PP
2Myb_DNA-binding59.29.2e-19102148148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l
  ORGLA05G0166300.1 102 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 148
                        79******************************.*************97 PP
3Myb_DNA-binding51.32.6e-16154197146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        + +WT eE+  l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++
  ORGLA05G0166300.1 154 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 197
                        579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.0825396IPR017930Myb domain
SMARTSM007171.6E-45798IPR001005SANT/Myb domain
PfamPF002497.3E-65895IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-1159111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-1660106IPR009057Homeodomain-like
PROSITE profilePS5129430.66197152IPR017930Myb domain
SuperFamilySSF466892.02E-3199195IPR009057Homeodomain-like
SMARTSM007174.1E-17101150IPR001005SANT/Myb domain
PfamPF002496.7E-17102148IPR001005SANT/Myb domain
CDDcd001671.14E-15104148No hitNo description
Gene3DG3DSA:1.10.10.603.4E-25107150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-22151203IPR009057Homeodomain-like
SMARTSM007171.3E-14153201IPR001005SANT/Myb domain
PROSITE profilePS5129421.856153203IPR017930Myb domain
PfamPF002496.9E-15154197IPR001005SANT/Myb domain
CDDcd001671.03E-11156199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGAMPAVKVE EEEEERNPVA SSPSVSEGSA HAAAMASPTA ADSIFGRRRK SGPVRRAKGG  60
WTPEEDEKLR KAVDIYNGKN WKKIEVQCLH RWQKVLDPEL IKGPWTQEED DVIINMVKKH  120
GPKKWSVIAR SLNGRIGKQC RERWHNHLDP QIRKEAWTVE EERVLARAHC MYGNKWAEIA  180
KLLPGRTDNS IKNHWNSSLR KKIDDYNTRD ILPVHPPVVG DGLKQLPKRP PADNHFDLNK  240
EPIICSRDRL GVVHSDPTSH QRASNLKDFK GCADYLSLGQ PVTSCEASAA DDSAFDLQGM  300
RMDSVHDKGT GNNFVCGKVQ GINFLGDKGL KINQISDKMG CSRQAKREGE AAINGGGSSL  360
QSEAHSVGSL CYQIPKMEDI APAQSPVFTA NYVPEHSRNV MHSPNGYTTP PTHGKGSDQL  420
SVESILRSAA EKFHGTPSIL RRRKRDKPTP AEDNDLKIGR LSSDDFHTPI GKCTTDSPQS  480
FKTAALLSLG PMDEQGSLDV SPPYRLRSKR LAVLKTVQNH LDFSSDEMSI CDTTMKSACG  540
NSGCANASSG VSSIQGKKLD EHMIGLETLT MNFAHTTKLD ATQPNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-64572035159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-64572035159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440447RRRKRDKP
2441446RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0166300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067560.0AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637435.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLI1PWB50.0I1PWB5_ORYGL; Uncharacterized protein
STRINGORGLA05G0166300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.27e-96myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]