PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0163600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 576aa    MW: 61749.8 Da    PI: 7.9726
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0163600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103543911954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  ORGLA05G0163600.1 354 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 391
                        554459******************************88 PP
2BELL91.77.2e-30221290372
               BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +e q +k++L+sl+e V+krY+qy++qlq+v+ssFe+vagl +a+p++s+Al+++S+hF+ Lk  i +q+
  ORGLA05G0163600.1 221 AEQQWRKTRLISLMEDVCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQL 290
                        58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-34149288IPR006563POX domain
PfamPF075264.8E-36154286IPR006563POX domain
PROSITE profilePS5007112.455332395IPR001356Homeobox domain
CDDcd000863.50E-14335396No hitNo description
SMARTSM003891.4E-11335399IPR001356Homeobox domain
SuperFamilySSF466894.28E-17337402IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-29338399IPR009057Homeodomain-like
PfamPF059205.1E-19352391IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSSDAGGGGG YGGGGGEHQH QQQQHHLLLG QAAGQLYHVP QHSRREKLRF PPDHPAESPP  60
PGSWPLPPAF YSYASSSSSY SPHSPTLAHA QLVAHGMPPG AATSGGAQIP SQNFALSLSS  120
ASSNPPPTPR RQFGGGGGGG AAGPYGPFTG YAAVLGRSRF LGPAQKLLEE ICDVGGRPAQ  180
LDRGSDEGLL DVDAMDAAGS VDHEMDGSDR AVADAVTVSG AEQQWRKTRL ISLMEDVCKR  240
YRQYYQQLQA VVSSFETVAG LSNAAPFASM ALRTMSKHFK YLKGIILNQL RNTGKGATKD  300
GLGKEDTANF GLMGGGAGLL RGNNVNSFSQ PHNIWRPQRG LPERAVSVLR AWLFEHFLHP  360
YPTDSDKQML AKQTGLTRNQ VSNWFINARV RLWKPMVEEI HNLEMRQLQK NPSLDKNQLS  420
VQHTQHSSDS SGKPCDPSNS LQGQSSSMTR NHSISASRHI EDGLSQMPHD ISGQVSFAYN  480
GLAAHHSIAM AHHHQPDLIG TGGAANAGGV SLTLGLHQNN NRAYIAEPLP AALPLNLAHR  540
FGLEDVSDAY VMSSFGGQDR HFTKEIGGHL LHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17341398158Homeobox protein Meis1
4xrs_B2e-17341398158Homeobox protein Meis1
5bng_A2e-17341399159Homeobox protein Meis2
5bng_B2e-17341399159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0163600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009160.0AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637721.10.0BEL1-like homeodomain protein 9
TrEMBLI1PW880.0I1PW88_ORYGL; Uncharacterized protein
STRINGORGLA05G0163600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.18e-68TALE family protein