PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA05G0157800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 277aa MW: 30759.8 Da PI: 5.4878

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA05G0157800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.9	6.6e-43	4	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppG+rF Pt+eelv++yL++k++g + ++e+vi+ +d+++++Pw+Lp + +++ + w++F++r++++a+g r++r+t sgyW ORGLA05G0157800.1 4 LPPGYRFYPTEEELVCFYLRHKLDGGRrvPDIERVIPVADVCSLDPWQLPGcaeahqgAWTGDGEPWFYFCPRQEREARGGRPSRTTPSGYW 95 79*********************9988788889***********6355544433337779********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ka g+ v+s++g+ +g+kkt+vfy+grap g kt+W m+eyr+ ORGLA05G0157800.1 96 KAAGTPGWVYSSDGRPIGTKKTMVFYRGRAPAGAKTKWKMNEYRA 140 *****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-49	3	172	IPR003441	NAC domain
PROSITE profile	PS51005	47.36	4	173	IPR003441	NAC domain
Pfam	PF02365	8.2E-24	5	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGELPPGYRF YPTEEELVCF YLRHKLDGGR RVPDIERVIP VADVCSLDPW QLPGCAEAHQ 60 GAWTGDGEPW FYFCPRQERE ARGGRPSRTT PSGYWKAAGT PGWVYSSDGR PIGTKKTMVF 120 YRGRAPAGAK TKWKMNEYRA FEEDDDNAAA AAPAQNHYLQ TRSDFSLCRL YTRSGCPRQF 180 DRRPPSSSVA GGGGENRAAP SSTAAAFANE DAAESSGKSQ KRKRSAPDDR LDSTSSSDDN 240 GGCDGSMLQQ QQQRQRGTDE ELVECSMTDW ADLLDWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-32	4	173	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-32	4	173	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-32	4	173	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-32	4	173	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	7e-32	4	173	17	165	NAC domain-containing protein 19
4dul_B	7e-32	4	173	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA05G0157800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063703	0.0	AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence.
GenBank	JN185442	0.0	JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638341.1	1e-171	NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	I1PW30	0.0	I1PW30_ORYGL; Uncharacterized protein
STRING	ORGLA05G0157800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-63	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]