PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0157600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 134aa MW: 14927.5 Da PI: 5.6014 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 25 | 71 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +W++ Ed+ + a ++ + +W+++a++++ gR++ ++ ++++ + ORGLA05G0157600.1 25 PWSKAEDKVFESALVAFPEHthnRWALVASRLP-GRSAHEVWEHYRVL 71 8***************9999999**********.***********976 PP | |||||||
2 | Myb_DNA-binding | 23.4 | 1.4e-07 | 113 | 134 | 3 | 24 |
SS-HHHHHHHHHHHHHTTTT-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtW 24 +WT+eE+ l++++ +++G g+W ORGLA05G0157600.1 113 PWTEEEHRLFLEGLEKYGRGDW 134 8*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.5E-7 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.07E-12 | 24 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-7 | 24 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.38E-7 | 25 | 72 | No hit | No description |
PROSITE profile | PS50090 | 6.934 | 25 | 72 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.3E-7 | 25 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-6 | 105 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.427 | 106 | 134 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-5 | 108 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.69E-6 | 113 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MAFYGGEMGG SSSSWVAPLV PSSRPWSKAE DKVFESALVA FPEHTHNRWA LVASRLPGRS 60 AHEVWEHYRV LVDDVDLIER GMVASPGCWD DGASRGGAQG ASRSGDERRR GVPWTEEEHR 120 LFLEGLEKYG RGDW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-14 | 22 | 94 | 7 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0157600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638220.1 | 9e-75 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 8e-28 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | I1PW28 | 2e-91 | I1PW28_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0157600.1 | 3e-92 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-26 | MYB family protein |
Publications ? help Back to Top | |||
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