PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0148600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 449aa MW: 49739.6 Da PI: 4.5984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.4 | 6.1e-49 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtd elv++yLk+k+ gkk + ++i++v++yk+ PwdLp + ++++++ ew+fF++rdkky++g+r+nr+t +gyWk++gkd+ ORGLA05G0148600.1 6 LPPGFRFHPTDVELVSYYLKRKIMGKKPLI-QAISDVELYKFAPWDLPaQsCLQSRDLEWFFFCPRDKKYPNGSRTNRSTPNGYWKTSGKDR 96 79*************************777.88**************95347778888********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ vg kktL+f++g+apkg++tdWvm ey++ ORGLA05G0148600.1 97 TIEL-NSRIVGSKKTLIFHEGKAPKGNRTDWVMYEYKM 133 ****.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-58 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.218 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-25 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MAQTCLPPGF RFHPTDVELV SYYLKRKIMG KKPLIQAISD VELYKFAPWD LPAQSCLQSR 60 DLEWFFFCPR DKKYPNGSRT NRSTPNGYWK TSGKDRTIEL NSRIVGSKKT LIFHEGKAPK 120 GNRTDWVMYE YKMEDNQLVS AGFSKDDFVL CKIFKKSGLG PRIGEQYGAP FNEEEWEHAD 180 AEMFPLLPNV ETSVFPLLPS SEVVNSTDDT RVQPSVAARA IEELPVQHLP HVCAGNGSTY 240 QNITVTGESA LMELPSQHSV ESIGDEVVSV DNCSNVVNNA DSPVIEGLVL EELSRFLTDS 300 PHHGNPVGEH SGLPPMSEAE AHAFEVSTND LYNEIAGLAE LGVPNGDGFS PSNAGVTEQQ 360 PTYFGVPNSE NYVNMDDIFA PDTRLSYAYP LPNNQFWHYP MDQFTYSTTL SAAFPSGDSR 420 PTMRIVDDLP AAANNGGFAS KPSMQFPLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-50 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0148600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB362160 | 0.0 | AB362160.1 Oryza sativa Japonica Group mRNA for transcription factor, complete cds. | |||
GenBank | AK099540 | 0.0 | AK099540.1 Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence. | |||
GenBank | EU846998 | 0.0 | EU846998.1 Oryza sativa Japonica Group clone KCS104B01 NAM-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639254.1 | 0.0 | NAC domain-containing protein 78 isoform X1 | ||||
TrEMBL | A0A0E0HEQ9 | 0.0 | A0A0E0HEQ9_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1PVT8 | 0.0 | I1PVT8_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q60EC0 | 0.0 | Q60EC0_ORYSJ; NAM-like protein | ||||
STRING | OS05T0426200-02 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA05G17930.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA05G0148600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 4e-80 | NAC domain containing protein 103 |