PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA05G0145800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21327.1 Da PI: 9.6518 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 6.8e-16 | 18 | 63 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +y+GVr+++ +g+Wv+eIr+p + r r +lg++ tae Aa a++aa ORGLA05G0145800.1 18 RYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATAEAAAVAHDAAVC 63 59****777.**********943...5*******************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.083 | 18 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-21 | 18 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.2E-9 | 18 | 61 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-22 | 18 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-15 | 18 | 65 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-9 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-9 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRVAASGGG GGGGEMMRYR GVRRRRWGKW VSEIRVPGTR ERLWLGSYAT AEAAAVAHDA 60 AVCLLRLGGG RRAAAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXRSVQ RVASDAGMAA 120 DAQLVDLRRD HPPAAAATSS SGSGVAGDGA RKQGTRGEVS DTYWCRNGED GSRRSWSSGS 180 EELIVYEGLS VDDMEILM |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA05G0145800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC124836 | 1e-141 | AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence. | |||
GenBank | AC137623 | 1e-141 | AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence. | |||
GenBank | AP014961 | 1e-141 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638993.1 | 8e-50 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | I1PVR0 | 1e-105 | I1PVR0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0145800.1 | 1e-106 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71520.1 | 2e-07 | ERF family protein |