PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0144900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 417aa MW: 44664.6 Da PI: 6.7218 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158 | 4e-49 | 42 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ORGLA05G0144900.1 42 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIR 132 79***************************.89***************7777899************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +glkktLvfy+g+apkg++++W+m+eyrl ORGLA05G0144900.1 133 GENSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 167 *********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-57 | 41 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.849 | 41 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 43 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MSRDDVDDVT AGAAGSGEEA AADQEEATAA VAGDSHENDL VMPGFRFHPT EEELIEFYLR 60 RKVEGRRFNV ELITFLDLYR FDPWELPAMA VIGEKEWFFY VPRDRKYRNG DRPNRVTASG 120 YWKATGADRM IRGENSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP AADADLFYKS 180 EISLCRVYKR SGIDDGHGHH QRPAGNVQAS SSSAAARPPE QHSGNNTAAG LPACRHRPSP 240 SSSSTTTAQQ HTSFHQLLQG ECSAAAAAAP PPPSLPASAT TRNSNASQLL MPPPPPRPPC 300 AAAYTSAAAA PTESAAVLAA ASTYSLLAAA GSSSTHIDEL STLLAGHSHG GAYGNNHIVA 360 GSHHHFPLPP SQLMPQLGTL PISPPLAAVS DKLWDWSSVP DTSTARDYDS SGFSDPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-55 | 43 | 191 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 43 | 191 | 19 | 166 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0144900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637953.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | I1PVQ1 | 0.0 | I1PVQ1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0144900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-95 | NAC domain containing protein 35 |