PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0133800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 359aa    MW: 39338.1 Da    PI: 8.3661
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0133800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like461.2e-14182224144
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 
                        k+r rW +eLHerFv++v qL G +kAtP +il l++ ++Lt++
  ORGLA05G0133800.1 182 KKRFRWPKELHERFVSVVLQL-GVDKATPNQILPLLNREDLTRD 224
                        68*******************.********************97 PP
2Response_reg42.72.9e-156715328109
                        EESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  28 eaddgeealellkekd.....pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        ++   ++a + ++e++     +D++l+ +  p  +dG++ll+   + +++lp++v++a +++ ++l++++ Ga d+l+Kp   eel +
  ORGLA05G0133800.1  67 AVMPKTAARDAVEELHenpwsYDMVLTEVHAPAgIDGFNLLQYAGT-DMDLPVVVFSADDDKRTVLKCVNSGACDYLVKPLRHEELKN 153
                        55555555555555555559************99********9755.559**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-2124167IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.0E-2924167No hitNo description
SMARTSM004482.5E-825155IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.13626159IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.61E-1428158No hitNo description
PfamPF000721.3E-1072153IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.606.7E-13182225IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-10182225IPR006447Myb domain, plants
SuperFamilySSF466892.33E-6182225IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAGSCSVAGS NKSKLADEEF SPVGMRVLLI DESTTYLKII TKLLLNCGYK GLTVTNFEIT  60
YVWRVDAVMP KTAARDAVEE LHENPWSYDM VLTEVHAPAG IDGFNLLQYA GTDMDLPVVV  120
FSADDDKRTV LKCVNSGACD YLVKPLRHEE LKNIWQHVYR RKLRSGGRRA AAAGNSSKGE  180
IKKRFRWPKE LHERFVSVVL QLGVDKATPN QILPLLNRED LTRDQRFRIA LTKSKALPSC  240
STIPIGETVH GIPLALQAIG TGNNQHLIVP FNRITFVRPR GVEIGQNGVV GGLVTGNNNV  300
VVPTATSIIA RAFGREIVNG ADLFDHGTLI RDSSSTSHDG AQNELGETNL GMCSLLGVY
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0133800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324830.0AC132483.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0014C03, complete sequence.
GenBankAC1349320.0AC134932.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092G21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881540.11e-149two-component response regulator ARR11-like
TrEMBLI1PVE00.0I1PVE0_ORYGL; Uncharacterized protein
STRINGORGLA05G0133800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1706467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-35response regulator 10