PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0129100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 349aa    MW: 39294.2 Da    PI: 8.689
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0129100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-171170155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  ORGLA05G0129100.1 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 70
                       57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-121170IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-171180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-161279IPR001471AP2/ERF domain
SMARTSM003806.2E-251284IPR001471AP2/ERF domain
PROSITE profilePS5103219.8361278IPR001471AP2/ERF domain
PRINTSPR003673.2E-51324IPR001471AP2/ERF domain
PRINTSPR003673.2E-56080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  60
YDLAALKYWG AGTQINFPVS DYARDLEEMQ MISKEDYLVS LRRKSSAFSR GLPKYRGLPR  120
QLHNSRWDAS LGHLLGNDYM SLGWKDITLD GKFAGTFGLE RKIDLTNYIR WWLPKKTRQS  180
DTSKMEEVTD EIRAIESSMQ RTEPYKFPSL GLHSNSKPSS VVLSACDILS QSDAFKSFSE  240
KSTKLSEECT FSKEMDEGKT VTPVPATGHD TTAVNMNVNG LLVQRAPYTL PSVTAQMKNT  300
WNPADPSADP LFWTNFILPA SQPVTMATIA TTTFAKNEVS SSDPFHGQE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0129100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8978770.0AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds.
GenBankEU3348570.0EU334857.1 Oryza sativa Indica Group AP2/EREBP-like protein (AP2LP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638088.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK23e-96AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLI1PV930.0I1PV93_ORYGL; Uncharacterized protein
STRINGORGLA05G0129100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.17e-94AP2 family protein