PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0108100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 21087.8 Da PI: 6.7789 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.1 | 1.8e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ ORGLA05G0108100.1 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQELPAQQRGDAVSSLVYEANARIRDPVYGCVGAISFLQNQVSQLQM 97 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e ORGLA05G0108100.1 98 QLAVAQAE 105 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.615 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVSKM LQELPAQQRG 60 DAVSSLVYEA NARIRDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQHRDDGAAH 120 QLDAAADHHP LLDQQQQQQM VVDAADAAAS FLVQNGGGGG GPAAQLISGY GSPAAGGGGG 180 HGVVHYAAAQ EHLKRESLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-48 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-48 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0108100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638859.1 | 1e-144 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 2e-72 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0D3G6D1 | 1e-143 | A0A0D3G6D1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PUN3 | 1e-143 | I1PUN3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0108100.1 | 1e-144 | (Oryza glaberrima) | ||||
STRING | OBART05G12620.1 | 1e-144 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-71 | LBD family protein |
Publications ? help Back to Top | |||
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