PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0101300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 320aa    MW: 34521.6 Da    PI: 7.3977
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0101300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.49.8e-091179174
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74
                       l pG++ +P+d+elv + L ++++g++l+l  vi ++d +++ P++L +  +++ +e +f +k+ + ++    +
  ORGLA05G0101300.1 11 LLPGLKLDPSDDELVGRCLLRRLQGQPLPLGGVILDADSLSSPPRNLLAD-HGRGDEPFFLAKKGNGKR----Q 79
                       579***************************999**************743.344557777776654433....2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-10481IPR003441NAC domain
SuperFamilySSF530983.16E-13151280IPR012337Ribonuclease H-like domain
PROSITE profilePS508799.626155280IPR002156Ribonuclease H domain
CDDcd062221.02E-26155276No hitNo description
PfamPF134563.7E-35156278No hitNo description
Gene3DG3DSA:3.30.420.101.8E-4157279IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQPLPL GGVILDADSL SSPPRNLLAD  60
HGRGDEPFFL AKKGNGKRQR SSVEGQRMCV DGGRLRVPDD GRGGGGGGLA FLPSIFPSPP  120
PVTRCSTPLS PSSPPFQPSR VIVRWWAPPA GWCKLNFDGS VYDDGSRRAS IGGVIRGCDG  180
GVVLAFAEIT EHWTVGVVEA RAMIRGLRLA LACFVDRIVV EGDDLVLVQL IRGEETQTRI  240
PAAMHEEILD LLRCFADVEV RHIYREGNSV AHTLCRQAYV HPGLWTDCAT LPAAVWEKID  300
DDLRGVVHER LCNKKKKSSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0101300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAC1377480.0AC137748.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0076A09, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881581.11e-115uncharacterized protein LOC112939071
TrEMBLI1PUG50.0I1PUG5_ORYGL; Uncharacterized protein
STRINGORGLA05G0101300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550713