PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0100600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 565aa MW: 60297.6 Da PI: 3.856 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.4 | 7.7e-25 | 7 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkd 89 l pG++F+P+d++lv +yL ++++g++l+l+ vi e+d +++ Pw+L + +++ +e +fF++++ k+ +gkr++r + g+W+ +t d ORGLA05G0100600.1 7 LLPGLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLIAD-HGRGDEAFFFAEAHAKNGKGKRQKRtVEGGGFWQgqKTCVD 97 579***************************999**************744.456789*******************555599**93344445 PP NAM 90 kevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 e l+ + e + k +L f+ + ++g ++ Wvmhey++ ORGLA05G0100600.1 98 GERLCVpddgcgggggGLEIAWRKYVLSFFA-NGERG-SSGWVMHEYAV 144 55544466777666544444889999****4.44444.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-30 | 5 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.825 | 7 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-15 | 9 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MATADGLLPG LKFDPSDHDL VGRYLLRRLQ GQPLPLDGVI LEADPLSAPP WKLIADHGRG 60 DEAFFFAEAH AKNGKGKRQK RTVEGGGFWQ GQKTCVDGER LCVPDDGCGG GGGGLEIAWR 120 KYVLSFFANG ERGSSGWVMH EYAVTAPDGL ASSQLRLYRV RFSGYGKKRK REPQCPGAHG 180 DDDGELQRAP PPRSMAETAL LEERGPLPHP VLGPASVVDQ CTDQGSSGVI DDSSLVFRDL 240 PDLIDLPVAE EADASHGAET ALLNEHLPLP PPQLFVPPTA VPLDLADDSN GADQNSYGMM 300 GDDQLLLPDL PGTINDDMPD LFVSQAEEAS AVPAISYHSS GFMGNEVAAL SDFELPESYS 360 SSDAMDGEAL ALSNYEFPES FEEDLSCIDF ATAKASSLGF PMDGYPMDEL FDDMPDQGSS 420 GAMDDSSVVF RDLPGLINLP AAEEADAIGD AETALLRDLA DDSNGSDRNS YGVMGDDQDR 480 LLLPEIPRRI DMPDLFVSQA EEAGLGGGAA LDSSSGAMDG EALALSDFEF HESVEEVLSC 540 MDFSTVDMSC LDVPIDELLD DLPAD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0100600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134346 | 0.0 | AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638590.1 | 0.0 | uncharacterized protein LOC107275325 | ||||
TrEMBL | I1PUF8 | 0.0 | I1PUF8_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0100600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |