PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0097200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 776aa    MW: 89733.8 Da    PI: 6.3424
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0097200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.61.4e-2086173188
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        ++Y++YA++ GF +++s+ ++s+ +++  +++f C  e +++e+  +  +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+
  ORGLA05G0097200.1  86 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERNSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 173
                        69************************************999998877567888899999***********99.9**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1986173IPR004330FAR1 DNA binding domain
PfamPF105511.3E-27298392IPR018289MULE transposase domain
PROSITE profilePS509669.965579615IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5590617IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MEDNDDRASA EITTDQENHL KDALIQVFAA TSEHQEGEGE GAEVVQDEEI GEGVEGVRDE  60
EIGDINSKPD KPYVGMEFHD KDEAKNYYDD YARKWGFITK ISSCRRSQIT KQYNRYEFAC  120
HSERNSRESG ASAGSRSRRS SRVLKTGCKA RMVVVKRDEK WVVTIVDLDH NHPPLNPSAL  180
MSLKPHRLIK DEDHDLLEFL RTNKIPTQRI MSVLCDLYGS MQNIPLARKD VSNLRATMRP  240
EAEGTCTDMA ATIKYFQESQ ADDPSFFYSM ELDSESKITS VFWVDGVSRE AYREFGDCVF  300
FNTKYITTKY CLPFAPIIGM NNHGQTVLFG CVLLKAEIEE TFEWVFQTFL KAMDGKVPKS  360
IMTDQDEAME KAIANVLPNT SHRRCSWYIW RNAKFKLGVL PSRLEGFEDD LRHCIDESFN  420
VEEFERRWAA VLDRYNLASN KYMQDLYKIR EKWVPCYFMD CFFPFMSITQ QSEVMEALFK  480
DFVHPGDIIQ NFIVQYEKLV QSCLDRDDKQ LFLTVKTDAN LWSKFPMEEQ ASKFYTRAIF  540
ERFQEHLKNT TMYNVVCEAT PYSYLVQNVF GDQSQNRRYV VHCKLEDETF TCVCKQYERE  600
GLLCEHILKV MTHRNVNLIP DKYLFRRWTL KGSDSAATRS HVPLNMAEAS TRKMRYSTIC  660
KKSVCMASEA CRTQEGYNLA LRSIEELTDK LAAINLTRQD QHLPRPNICD KNGKGITMGE  720
SNTIAEKVLS ESCLKDPTKI RPAAFDNNSE SARKRNKVMK AVQDLRSPFQ VTKLTD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0097200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639432.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1PUC40.0I1PUC4_ORYGL; Uncharacterized protein
STRINGORGLA05G0097200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-106FAR1-related sequence 5