PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0093700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 326aa    MW: 36501 Da    PI: 4.9988
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0093700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC72.65.8e-2331128296
              NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                        ++ fw +    ie ++  ++h lP+  +k++++  +d  m+sa++P++++k celf+ eltlr+w+ a++ +r  +  +dia+a+t t+ + 
  ORGLA05G0093700.1  31 MEEFWRRSqeqIEASAGNHEHILPIDCVKNVIRPKDDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYH 122
                        7789976523377777778999********************************************************************** PP

              NF-YC  91 flvdiv 96 
                        fl ++ 
  ORGLA05G0093700.1 123 FLGNVL 128
                        **8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.49E-1611124IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.7E-1853128IPR009072Histone-fold
PfamPF008082.3E-853115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAIPTKEEVE HNEEDNTFSR LQLLAQQRRA MEEFWRRSQE QIEASAGNHE HILPIDCVKN  60
VIRPKDDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES  120
YHFLGNVLRS HKALGSTAPD IDTSARKHIK LDQMTSLYHS TQEMQASRLA GYPPHVPIYP  180
PIGQMGTQHT LSPFAFMMQG ESLLNMKREK SLVNEVMVCT NKMSINNFDG ATSIGGGSSS  240
DAAIVVQQGE TTHPFSSQNA CPSLEDNYVV PMPTGHVQSF SPPTNINVKK LHQEEKNIYQ  300
DVAEEDMSNE SLEGSQKDED LFLHEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0093700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639189.10.0uncharacterized protein LOC4338359
TrEMBLA0A0D3G5R80.0A0A0D3G5R8_9ORYZ; Uncharacterized protein
TrEMBLI1PU890.0I1PU89_ORYGL; Uncharacterized protein
STRINGORGLA05G0093700.10.0(Oryza glaberrima)
STRINGOBART05G10860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-19nuclear factor Y, subunit C4