PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0088100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 318aa    MW: 35011.1 Da    PI: 7.3582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0088100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056587123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ Cg+ F++   L  H+++H
  ORGLA05G0088100.1 65 YSCSFCGREFRSAQALGGHMNVH 87
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-66291No hitNo description
Gene3DG3DSA:3.30.160.602.7E-46389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0026587IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-66588IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2176592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDPARYWILA RRKLGDQKAP LFPTPHITIG AGGSSASYYE SWEERAFAED SAGHLGGCIW  60
PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLSGVV EDGTGGESHG MPPNQNYMIQ  120
PCAPQIGTLQ HAYSPNPRSG SILAADTNPN SICDVVAYPA RSLLQVAAAR TALGKQVLNA  180
PLVSSKSPSA GREHGKRETL FLGAVRLAQD HDTVSSNLDL RVGKNELKIT TVLGCRSRRD  240
FMYDNDRADD EETVEASHKK RRIDLEVNPL ILTSSTSNHQ QQDGGDDQHH EKILKLYRSS  300
SVEELDLELR LGEAPKEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-126087229superman protein
2l1o_A2e-126087229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0088100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444520.0AC144452.2 Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0025G07, complete sequence.
GenBankAK1088290.0AK108829.1 Oryza sativa Japonica Group cDNA clone:002-151-G02, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCT8289470.0CT828947.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638381.10.0uncharacterized protein LOC4338296
TrEMBLA0A0D3G5I10.0A0A0D3G5I1_9ORYZ; Uncharacterized protein
TrEMBLI1PU330.0I1PU33_ORYGL; Uncharacterized protein
STRINGORGLA05G0088100.10.0(Oryza glaberrima)
STRINGOBART05G10090.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-26C2H2 family protein