PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0068300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 210aa    MW: 21451.5 Da    PI: 6.1506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0068300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000234769123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C  C++ F++   L  H++ H
  ORGLA05G0068300.1 47 YECVFCKRGFTTAQALGGHMNIH 69
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-64474No hitNo description
PROSITE profilePS5015710.994774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDMDDGSSKG SRADESVSSL GTDDHAAAAE PMSSSPPPAT ATARPYYECV FCKRGFTTAQ  60
ALGGHMNIHR RDRAAKPAGP GAAAPPRDAS TTAVSRSVDC YSQFRHLAAA YPVPAATSGA  120
AGTAGSSSSF TMYYGGTGAG AEAAVVAGPR ELSLFDAATD HGLHLGVGRR GGGGDGGESR  180
TPEGSEQQVA GELPERELDL ELRLGRHTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0068300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454770.0AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638543.13e-98uncharacterized protein LOC107275515
TrEMBLA0A0D3G4R61e-147A0A0D3G4R6_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZVZ31e-147A0A0D9ZVZ3_9ORYZ; Uncharacterized protein
TrEMBLA2Z6671e-147A2Z667_ORYSI; Uncharacterized protein
TrEMBLI1PTI51e-147I1PTI5_ORYGL; Uncharacterized protein
STRINGOGLUM05G08360.11e-148(Oryza glumipatula)
STRINGORGLA05G0068300.11e-148(Oryza glaberrima)
STRINGOBART05G07970.11e-148(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-10C2H2 family protein