PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0055000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 39138.1 Da PI: 9.655 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.4 | 2.4e-35 | 57 | 211 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 +p+G+rF+Ptd+el+ e+L++kv++ ++++ + i+ +i++++P++Lp v+ + + +fF++++k+y+tg+rk+r+ ORGLA05G0055000.1 57 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTRDGLSKHFFHRSAKAYPTGTRKRRKvladqqp 146 699************.99******9987777664443344777756**********.555666799******************88****** PP NAM 78 .............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tgk++e+++ +g+ +g+kk+Lv+y g+++k+ekt+Wvmh+y+l ORGLA05G0055000.1 147 ddhpqaskgrnvaAAETRWHKTGKTREITV-RGQPKGCKKILVLYtsFGKKRKAEKTSWVMHQYHL 211 **********99877899************.999***********55589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-35 | 49 | 230 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.921 | 57 | 230 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-16 | 58 | 211 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGAGSIQARM SSDGASGSIG MKHDDGDHRP ITGASSRRCP SCGHDPDCNK PFDMVGMPAG 60 VRFDPTDQEL IEHLEAKVKD GGSTSHPLID EFIHTIQGED GICYTHPENL PGVTRDGLSK 120 HFFHRSAKAY PTGTRKRRKV LADQQPDDHP QASKGRNVAA AETRWHKTGK TREITVRGQP 180 KGCKKILVLY TSFGKKRKAE KTSWVMHQYH LGELDDEKEG ELILSKVFYQ TQTRSAAAAE 240 APVSSGAAME VQGQQQQVLK LQADDGHFSS APTKKRLHQD VVAQVKVDRG HHCMPAQRQV 300 NFNLKVTPVP TTSSFPVVVD KQLYSPVALF RSEHLHVGKN FNSSAPKSRL ASPALAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-12 | 55 | 211 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0055000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242227 | 0.0 | AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637950.1 | 0.0 | NAC domain-containing protein 75 isoform X2 | ||||
Swissprot | Q9M0F8 | 5e-92 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | I1PT52 | 0.0 | I1PT52_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0055000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17425 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 8e-85 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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