PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0041400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 271aa    MW: 29756.4 Da    PI: 9.7835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0041400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-1170114554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  +v+ +k+L
  ORGLA05G0041400.1  70 HSEAERRRRERINAHLATLRRILPDA-----KQMDKATLLASVVNQVKHL 114
                        9*************************.....67*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.40565114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1269123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1170117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-970114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1071120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.85E-6153208No hitNo description
Gene3DG3DSA:3.30.70.2606.9E-6154205No hitNo description
PROSITE profilePS516719.973156235IPR002912ACT domain
CDDcd048731.19E-6158224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAACQQQIWQ EGKQQQHLHH GGYDDLSSVY RGTVVLPRRQ GGLAPEPPPP PPSSSSGRSA  60
AAQATAMRIH SEAERRRRER INAHLATLRR ILPDAKQMDK ATLLASVVNQ VKHLKTRATE  120
ATTPSTAATI PPEANEVTVQ CYAGGEHTAA ARTYVRATVS CDDRPGLLAD IAATFRRLRL  180
RPLSADMSCL GGRTRHAFVL CREEEEEDAA AEARPLKEAV RQALAKVALP ETVYGGGGRS  240
KRQRLMMESR YSTAVVHTHA DPLQYCXYNS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0041400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106190.0AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638377.11e-159putative transcription factor bHLH107
RefseqXP_015638378.11e-159putative transcription factor bHLH107
RefseqXP_015638379.11e-159putative transcription factor bHLH107
TrEMBLI1PSR60.0I1PSR6_ORYGL; Uncharacterized protein
STRINGORGLA05G0041400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-18bHLH family protein