PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0022200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 317aa    MW: 34426.5 Da    PI: 5.5556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0022200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-192976148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  ORGLA05G0022200.1 29 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 76
                       89********************************************97 PP
2Myb_DNA-binding513.3e-1682125146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  ORGLA05G0022200.1  82 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 125
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1992476IPR017930Myb domain
SuperFamilySSF466894.49E-3127123IPR009057Homeodomain-like
SMARTSM007171.5E-152878IPR001005SANT/Myb domain
PfamPF002496.5E-172976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-233083IPR009057Homeodomain-like
CDDcd001675.79E-123176No hitNo description
PROSITE profilePS5129422.52777131IPR017930Myb domain
SMARTSM007174.2E-1481129IPR001005SANT/Myb domain
PfamPF002491.4E-1482125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2284130IPR009057Homeodomain-like
CDDcd001671.36E-1086125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEMMGMAMSP AMSSATAAAA SEDEGDLRRG PWTVEEDMLL VDYIANHGEG RWNSLARCAG  60
LRRTGKSCRL RWLNYLRPDV RRGNITADEQ LLILDLHSRW GNRWSKIAQY LPGRTDNEIK  120
NYWRTRVQKH AKQLRCDVNS KEFRDVVRHV WMPRLVERIQ ADAAAAGEVA APAPVSAAAT  180
RSMSSPAGAM YLHHQQIPLA AGAMVVAPAA SSEAYHHHGG GDTSCSEPSQ AAVTMSPDDA  240
SSTLRSSAAA AAAEDEVIHG DVLSGSWSEL LATTTTTIAA TGGRDGAATA GLPDFDELGD  300
FEDNLWSLED IWLHQQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-252612324120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0022200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1182880.0AC118288.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077L08, complete sequence.
GenBankAK2436590.0AK243659.1 Oryza sativa Japonica Group cDNA, clone: J100089B08, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638460.11e-178transcription factor MYB2-like
TrEMBLI1PS740.0I1PS74_ORYGL; Uncharacterized protein
STRINGORGLA05G0022200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-80myb domain protein 78