PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0016500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 23608.2 Da PI: 7.0477 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.4 | 4.1e-37 | 36 | 148 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.............peeeredamsslvyeAearardPvyGavgv 79 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll+ + pee+r da+ss+vyeA+ar+rdPvyG++g ORGLA05G0016500.1 36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQMAssplmspswlqelPEEQRADAVSSMVYEANARIRDPVYGCAGA 127 7*******************************************98866555555555555589999************************* PP DUF260 80 ilklqqqleqlkaelallkee 100 i +lq+q++ lka+la++++e ORGLA05G0016500.1 128 ICQLQKQVNDLKAQLARAHAE 148 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.971 | 35 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-38 | 36 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TVVLSPCAAC KILRRRCVDR CVLAPYFPPT 60 EPHKFTTAHR VFGASNIIKL LQMASSPLMS PSWLQELPEE QRADAVSSMV YEANARIRDP 120 VYGCAGAICQ LQKQVNDLKA QLARAHAELA GARAQHAHLV ALLCMEMAAA APPQHPTTTA 180 AAAAYCAAVG GAASPAVPVD ALYVVDGAGA AAMQASPIGW VDEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-40 | 35 | 149 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-40 | 35 | 149 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0016500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079021 | 0.0 | AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence. | |||
GenBank | AC093089 | 0.0 | AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638880.1 | 1e-124 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 6e-59 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | I1PS17 | 1e-162 | I1PS17_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0016500.1 | 1e-163 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-51 | LOB domain-containing protein 1 |