PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0007900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1389aa    MW: 158143 Da    PI: 8.0267
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0007900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.11.7e-1073587231366
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA+av+++d   a++l++++++++spdgd++qRla+y++ +L+arla+ +s++y++l +s+ts    ++ l+a++l+  ++P+ +
  ORGLA05G0007900.1 358 LRNLLIHCAQAVAADDRISASELVKKIRQHSSPDGDSNQRLAFYLVDGLEARLAGIGSQVYRKLMASRTS---AESLLKAYSLYLSACPFER 446
                        689*************************************************************999998...89999************** PP

               GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         s+  aNq+Il+a +g+  ++vHi+ f+i  G+QWp+L+q La+ ++gpp+lRiTg++ p++g    e +eetg+rLa++A+ ++vpf+++ 
  ORGLA05G0007900.1 447 ASFAYANQTILDASKGQqpRKVHIVHFGICTGFQWPSLIQRLANEEGGPPKLRITGIDMPQPGfhPCEIIEETGKRLADYANLFKVPFQYQG 538
                        *****************999******************************************9999999*********************** PP

               GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +a+r+e++++e+L+++++E+l+Vn+++++++l de vs++s+rd+vLk+++ ++P+v+++   + +++s+ F +rf e l +ys+lfd+++
  ORGLA05G0007900.1 539 -IASRWETVQIEDLNIDKDEVLIVNCMFRMKNLGDEMVSMNSARDRVLKIMRMMNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMID 629
                        .7****************************************************************************************** PP

               GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                        a++pr++e+r+++Er l+g+e+ n++acegaer+er e++++W++r  +aGFk++p++  + k++  + + ++ + +  +e+ g+l++gWk+
  ORGLA05G0007900.1 630 ANVPRDNEARKMIERGLFGQEALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPATLKEIINMKKGIYHEDFVADEDGGWLLQGWKG 721
                        *************************************************************************999***************9 PP

               GRAS 365 rp 366
                        r+
  ORGLA05G0007900.1 722 RK 723
                        96 PP
2GRAS367.12.5e-112101913864374
               GRAS    4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93  
                         lL++cA+a++s+++  a++lL +++++a pdgd  qRla +f+ +L+arla+++s++y++l +++ts   + + l+a++l++ ++P+  +
  ORGLA05G0007900.1 1019 LLIQCAQAIASNNHPFASELLRKIRHHALPDGDGSQRLANCFADGLEARLAGTGSQMYEKLMAKQTS---TRDMLKAYHLYFVACPFEMV 1105
                         8****************************************************************99...899***************** PP

               GRAS   94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 
                         ++   N++I +a+eg++++Hi+Df+i  G+QWp+L+q La+R++gpp+lRiTgv+ p++g   +e++eetg+rLa++A+ ++vpf+++  
  ORGLA05G0007900.1 1106 TYYFSNKTIIDALEGKTTLHIVDFGILFGFQWPCLIQRLAKREGGPPKLRITGVDVPQPGfrPHERIEETGKRLAEYANMFNVPFQYHG- 1194
                         ***********************************************************9*****************************. PP

               GRAS  182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 
                         +a+r+e++ +e+L+++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+++   +  ++s+ Fl+rf e l +ys+lfd+l
  ORGLA05G0007900.1 1195 IASRWETICIEDLSIDKDEVLIINCMSRMRKLGDETENIDSARDRVLHMMKRMNPQVFILGVVNGLYSSPFFLTRFREVLFHYSSLFDML 1284
                         7***************************************************************************************** PP

               GRAS  272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 
                         ++++pr++e+ri vE+ l+g+++ n+vacegaer+er e++++W++r+ +aGFk+ p+++ + +   +  + +++d + ++e+sg+l++g
  ORGLA05G0007900.1 1285 DNNVPRNHEARILVEKDLFGNDALNAVACEGAERIERPESYKQWQMRILRAGFKQRPVNQAILNRSVHYKELYHED-FVIDEDSGWLLQG 1373
                         ************************************************************9999999999999955.************* PP

               GRAS  362 WkdrpLvsvSaWr 374 
                         Wk+r + ++S W+
  ORGLA05G0007900.1 1374 WKGRIIQALSTWK 1386
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.146332711IPR005202Transcription factor GRAS
PfamPF035146.0E-105358723IPR005202Transcription factor GRAS
PROSITE profilePS50985659901367IPR005202Transcription factor GRAS
PfamPF035148.5E-11010191386IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1389 aa     Download sequence    Send to blast
MNMAHAPLPS LLCLKEPIYD VVAELELLIS KQQLSLYNYS PSDPQLFSQP TTGSRTYLSG  60
AVTIPGICND KSNLGQQQFQ IDAALSLEYQ RIRSSDALCY ISRVLMEDVD ERVDLHQGEA  120
ALQAAEKPFY DILGQVYPPS LNRLALHSAN EPDTPDESSS RNNYHSRYHS SHSSFNMLQP  180
LPTPLSPYSY GRSLFLPNQH LVSTAWTSTF GIPGFQIRRG AEEEKRFVPI IDKLVIDLDT  240
DRGLSISKMT TKAKVGDKKR YAIFELTDQR HSPYTTDLDI LEGRNSKRYA ITYCEIIRND  300
MFDRVLLCYG VENFAEASNL RKIMTKQARK NSLNGQTRGS AQRKLRGMKQ LKKDVVDLRN  360
LLIHCAQAVA ADDRISASEL VKKIRQHSSP DGDSNQRLAF YLVDGLEARL AGIGSQVYRK  420
LMASRTSAES LLKAYSLYLS ACPFERASFA YANQTILDAS KGQQPRKVHI VHFGICTGFQ  480
WPSLIQRLAN EEGGPPKLRI TGIDMPQPGF HPCEIIEETG KRLADYANLF KVPFQYQGIA  540
SRWETVQIED LNIDKDEVLI VNCMFRMKNL GDEMVSMNSA RDRVLKIMRM MNPRVFILGI  600
VNGSYSSPFF ITRFKEVLFH YSSLFDMIDA NVPRDNEARK MIERGLFGQE ALNIIACEGA  660
ERTERPESYK QWQARCLKAG FKQLPVDPAT LKEIINMKKG IYHEDFVADE DGGWLLQGWK  720
GRKSVKKKVT RNNPNINQPD VNKKITNFCF RSLKQCRSSI MDSPEYCQTN SNITLDYINR  780
ILMEEDIDEK ISIKKGQDAL QATEKPFYDI LGKAYPSSSK ETAINGDSQA DYPDNGSSSY  840
HEQACSGSFV SDLLGSQDAH SITTDWSSEF DRLALQFRRG VEEAKRFIPN IEKLVDDPEK  900
NGLYACKQTT ETTEQKGKHE NKIRNHPHDP HVEHIELMEA RNSKHMAIST SETIRDEMFD  960
SILLCNRQLP GEVANLRGMM AKEASDNPKK FQSKGYGKGQ RKPHSSKKKQ KEAIDLSVLL  1020
IQCAQAIASN NHPFASELLR KIRHHALPDG DGSQRLANCF ADGLEARLAG TGSQMYEKLM  1080
AKQTSTRDML KAYHLYFVAC PFEMVTYYFS NKTIIDALEG KTTLHIVDFG ILFGFQWPCL  1140
IQRLAKREGG PPKLRITGVD VPQPGFRPHE RIEETGKRLA EYANMFNVPF QYHGIASRWE  1200
TICIEDLSID KDEVLIINCM SRMRKLGDET ENIDSARDRV LHMMKRMNPQ VFILGVVNGL  1260
YSSPFFLTRF REVLFHYSSL FDMLDNNVPR NHEARILVEK DLFGNDALNA VACEGAERIE  1320
RPESYKQWQM RILRAGFKQR PVNQAILNRS VHYKELYHED FVIDEDSGWL LQGWKGRIIQ  1380
ALSTWKVET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4836213868375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0007900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881341.10.0scarecrow-like protein 9
TrEMBLI1PRT10.0I1PRT1_ORYGL; Uncharacterized protein
STRINGORGLA05G0007900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-163GRAS family protein