PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0004600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 403aa    MW: 44738.8 Da    PI: 8.3353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0004600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001391113323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C+  +Cgk+F +   L++H  +H
  ORGLA05G0004600.1  91 CSyeNCGKTFVDVAALRKHAHVH 113
                        77779**************9887 PP
2zf-C2H218.55.3e-06118142123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y C+   Cgk F ++s LkrH   H
  ORGLA05G0004600.1 118 YICQepGCGKKFVDSSKLKRHHLIH 142
                        889999***************9988 PP
3zf-C2H218.94.2e-06148172123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        + Cp   Cgk Fs   nL++H++tH
  ORGLA05G0004600.1 148 FICPhpGCGKAFSLDFNLRSHLKTH 172
                        789*********************9 PP
4zf-C2H216.52.3e-05178202123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp   Cgk+F++ s Lk+H + H
  ORGLA05G0004600.1 178 HVCPfpACGKRFTSDSKLKSHVKGH 202
                        789999***************9988 PP
5zf-C2H218.36.2e-06263288123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        y+Cp   Cgk + +++ L+ H++t H
  ORGLA05G0004600.1 263 YVCPydGCGKAYIHSYKLNLHLKTqH 288
                        9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-1284113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40689118IPR007087Zinc finger, C2H2
SMARTSM003550.01689113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.32E-792142No hitNo description
Gene3DG3DSA:3.30.160.606.9E-13115138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.066118147IPR007087Zinc finger, C2H2
SMARTSM003550.0012118142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-12129182No hitNo description
Gene3DG3DSA:3.30.160.603.3E-18139173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.822148177IPR007087Zinc finger, C2H2
SMARTSM003550.0011148172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8176202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367178207IPR007087Zinc finger, C2H2
SMARTSM003550.012178202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180202IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-7181202No hitNo description
SuperFamilySSF576671.92E-7258286No hitNo description
Gene3DG3DSA:3.30.160.604.5E-10259288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.619263296IPR007087Zinc finger, C2H2
SMARTSM003550.0021263288IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEYAAPAGAG AGAGGYYYYP PSQQHKPRRP PRPAARWVKH WIPQDLATSS GKCALYKWVR  60
EDVYKNLKDG KAVPEPEAVK PEPTTEILFL CSYENCGKTF VDVAALRKHA HVHNERQYIC  120
QEPGCGKKFV DSSKLKRHHL IHTGQKDFIC PHPGCGKAFS LDFNLRSHLK THALENYHVC  180
PFPACGKRFT SDSKLKSHVK GHEKTGTPIT AQYVPSSDKP QSSSKPATPA TTKPTTPAAT  240
KTTTPASTKP TTPAPTSFAE RPYVCPYDGC GKAYIHSYKL NLHLKTQHPE HGQEENGRIA  300
AHASEHAVND RANQYNYAEI VDLAPNPKRS KTNSGHKTPS SNKAYNVKIS SVLPADISGV  360
KNQWPGKYED DSEETEEDQG NNIEDGWRYG NQNADDEETE YED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34912048119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0004600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034440.0AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637702.10.0zinc finger transcription factor YY1
TrEMBLA2XZG90.0A2XZG9_ORYSI; Uncharacterized protein
TrEMBLI1PRP80.0I1PRP8_ORYGL; Uncharacterized protein
STRINGORGLA05G0004600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.14e-91C2H2 family protein