PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA04G0281500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 44229.9 Da PI: 10.3883 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 325 | 345 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + +L++H++++ ORGLA04G0281500.1 325 RCSQCGKEF-KPQELHSHMQSC 345 6********.*********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06136 | 2.2E-34 | 21 | 166 | IPR010369 | Protein of unknown function DUF966 |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MEKGGGSQKG GGGGGGEARR INVVYFLSRG GRTDHPHLFR VNHHRAGVRL RDVKRWLSEL 60 RGQDMADNFS WSYKRKYKAG YIWQDLMMDD DLITPISDNE YVLKGCDVRR ATESPKEKSS 120 SLAEEPKKLD SQEVKVACDQ KQVEEVTTTT APDSDERSPK TLPPVDEDSP GEPASRSTAP 180 LKKDLPRGLR EERKKQQREV VKVVSKAVVV PAPAPEQKVK GAASGRISSH TPPAVGSARR 240 MHLAQLLHNL LTCGAADADD TALRPVLRHG ADDDGGDWPP TPVCPGIDGC GLRVGKKVKV 300 RRGRKDKAKP KRDGGDSHKP ASLPRCSQCG KEFKPQELHS HMQSCRVFRE KMRSSTSSRV 360 SVDRGRTSAA ARPEHRRTRS KGAAAAAPGD TSDRPSAVLL LRDS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA04G0281500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241481 | 0.0 | AK241481.1 Oryza sativa Japonica Group cDNA, clone: J065166E16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633111.1 | 0.0 | protein UPSTREAM OF FLC | ||||
Refseq | XP_025877314.1 | 0.0 | protein UPSTREAM OF FLC | ||||
TrEMBL | B8AAD9 | 0.0 | B8AAD9_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NS61 | 0.0 | I1NS61_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0270100.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | ORGLA04G0281500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10794 | 12 | 13 |