PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0277700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 298aa    MW: 32128.8 Da    PI: 8.0911
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0277700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.25e-242394171
           trihelix  1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
                       rWt++e+l+L++arr me+r rr+ +    +W++vs+++r++g+er+p qC+++w nl+++ kki ++ek+ 
  ORGLA04G0277700.1 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 94
                       8**********************97764889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.761681IPR017877Myb-like domain
SuperFamilySSF466895.92E-52183IPR009057Homeodomain-like
PfamPF138373.2E-102391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
XXXXXXXXXX XXXXXXXRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSAY  60
CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAVVSG AGDNAVAAGE GEGEAPPPPR  120
LESFWDMRGE QRRARQLPSS FDREVYDALV GGHGAAPPSD FGEDLADGDG VDADELPPPP  180
LMVMPISATV SAKRGGAASD KNSTSQHDGG GGGGLKDSEA TYGAGVGGEE GTTTATATAT  240
TTSIGRQVIE ALERGNRMLG DQLEAQRAAW DAEREQRVAL LAAVDKLAGA VCRIADKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0277700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.11e-174trihelix transcription factor ASR3
TrEMBLA0A0E0N7270.0A0A0E0N727_ORYRU; Uncharacterized protein
STRINGOGLUM01G46800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-43Trihelix family protein