PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0258700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 449aa    MW: 46483 Da    PI: 10.3196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0258700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-12276320347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  ORGLA04G0258700.1 276 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 320
                        6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.851159217IPR017884SANT domain
SMARTSM007172.6E-5160215IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-9163219IPR009057Homeodomain-like
CDDcd001671.71E-5164213No hitNo description
PROSITE profilePS5129416.605269325IPR017930Myb domain
SuperFamilySSF466893.81E-16271326IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-17273323IPR006447Myb domain, plants
SMARTSM007179.3E-11273323IPR001005SANT/Myb domain
CDDcd001678.12E-10276321No hitNo description
Gene3DG3DSA:1.10.10.601.7E-10276319IPR009057Homeodomain-like
PfamPF002496.0E-11276320IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
VRVCIRCLSP SSPRRKPGPT RHRAPPSQPA SQPLSRXNKI SPASPRLASP RGNIHHTPPP  60
PRPPLRGRSP PPPPPPSPAL PLSLLGGNPN LFLPRKPAAF LKRIKSPSLI RRRNPSPQNL  120
AAPRAVLGFE LMAVEEASSS SGGGRGGGGG GGGEEGLSGC GGGWTREQEK AFENALATVG  180
DDEEEGDGLW EKLAEAVEGK TADEVRRHYE LLVEDVDGIE AGRVPLLVYA GDGGVEEGSA  240
GGGKKGGGGG GGGGGGGHGE KGSAKSAEQE RRKGIAWTED EHRLFLLGLE KYGKGDWRSI  300
SRNFVISRTP TQVASHAQKY FIRLNSMNRE RRRSSIHDIT SVNNGDTSAA QGPITGQPNG  360
PSANPGKSSK QSPQPANAPP GVDAYGTTIG QPVGGPLVSA VGTPVTLPVP AAPHIAYGMH  420
APVPGAVVPG APVNMPPMPY PMPPPTSHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-12159234678RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241249GGKKGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0258700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686230.0AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636999.10.0transcription factor SRM1
SwissprotQ9FNN67e-98SRM1_ARATH; Transcription factor SRM1
TrEMBLI1PQW80.0I1PQW8_ORYGL; Uncharacterized protein
STRINGORGLA04G0258700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-77MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]