PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0254800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 711aa    MW: 80077.9 Da    PI: 5.1361
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0254800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06116138427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C +f + G C  GdrC F Hgp
  ORGLA04G0254800.1 116 VPCYYFKK-GNCLKGDRCAFYHGP 138
                        689*9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9533160IPR000571Zinc finger, CCCH-type
SMARTSM003560.00643259IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-113388No hitNo description
PROSITE profilePS5010310.9916288IPR000571Zinc finger, CCCH-type
SMARTSM003560.456487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502112139IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5113138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.77E-5113137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5117139IPR000571Zinc finger, CCCH-type
PfamPF146081.5117137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN  60
ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY  120
FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI  180
QHGAPITNER GKTAVDRSTV NSARTATVAI PVASNAMSCP KSEKVKNSTP AALKESFTTS  240
SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND  300
ADGAAYLHDE DFGGDMYPVE DYEYAPADFN VCAHHEREQF NGMDEQDQMG HMYDGYERKR  360
RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PECNGEQRRR  420
DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR  480
LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNLR  540
DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA  600
EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEVDPVENQD  660
ADNYDQREGE SYYEPIEGQD YKSDDENAYE DDDEEYDDDD DFARKVGVVF S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357361RKRRR
2357362RKRRRS
3473480RRRLRDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0254800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708570.0AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636581.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLI1PQS90.0I1PQS9_ORYGL; Uncharacterized protein
STRINGORGLA04G0254800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]