PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0249800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 309aa    MW: 31745.7 Da    PI: 9.8875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0249800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08105130227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+ C  +     Ck+Gd+C+FaHg+
  ORGLA04G0249800.1 105 KTRMCTKYNTAEGCKFGDKCHFAHGE 130
                        9***********************96 PP
2zf-CCCH38.12.6e-12276301127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC +f + GtC +GdrC+FaHg+
  ORGLA04G0249800.1 276 YKTKLCENFVK-GTCTFGDRCHFAHGE 301
                        9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.5963765IPR000571Zinc finger, CCCH-type
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-53862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-63962IPR000571Zinc finger, CCCH-type
PfamPF146080.494562No hitNo description
PROSITE profilePS5010313.892103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.046103130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-13104135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-8104134IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-5105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.01E-14170245IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.0E-15174244IPR004088K Homology domain, type 1
SMARTSM003228.9E-11174244IPR004087K Homology domain
PROSITE profilePS5008414.257175239IPR004088K Homology domain, type 1
PfamPF000131.5E-10177239IPR004088K Homology domain, type 1
CDDcd001059.27E-14177239No hitNo description
Gene3DG3DSA:4.10.1000.105.7E-15274305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-9274305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.488275302IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8275301IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10276301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGAGAARKR SRPDTANGGA AGGKRSRETE SFQTGLSSKS KPCTKFFSTI GCPFGEGCHF  60
SHFVPGGYQA VAKTLNLGNP AVPAPARAPM DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF  120
GDKCHFAHGE RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI  180
SVDASLAGGI IGKGGVNTKQ ICRVTGVKLS IRDHESDPNL KNIELEGNFD QIKQASNMVG  240
ELIATISAST PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG  300
ENEQRKGAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0249800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8338350.0CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636567.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK10.0C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLI1PQM90.0I1PQM9_ORYGL; Uncharacterized protein
STRINGORGLA04G0249800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-52C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]